Gm4202 (predicted gene 4202) - Rat Genome Database

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Gene: Gm4202 (predicted gene 4202) Mus musculus
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Symbol: Gm4202
Name: predicted gene 4202
RGD ID: 2299485
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: 100043062; Gm17510
Related Functional Gene: Ywhab  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39392,596,732 - 92,597,458 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl392,596,733 - 92,597,465 (+)EnsemblGRCm39 Ensembl
GRCm38392,689,425 - 92,690,151 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl392,689,426 - 92,690,158 (+)EnsemblGRCm38mm10GRCm38
MGSCv37392,492,476 - 92,495,109 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36392,492,476 - 92,495,109 (+)NCBIMGSCv36mm8
Celera394,392,827 - 94,395,461 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map340.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm4202
9 total Variants

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:108
Interacting mature miRNAs:109
Transcripts:ENSMUST00000169025
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 43 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse

1 to 10 of 43 rows
PMC150726P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38392,689,465 - 92,689,766UniSTSGRCm38
MGSCv37392,493,387 - 92,493,688UniSTSGRCm37
Celera1758,788,395 - 58,788,695UniSTS
Celera394,394,249 - 94,394,550UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map15B3.1UniSTS







Ensembl Acc Id: ENSMUST00000169025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl392,596,733 - 92,597,465 (+)Ensembl
GRCm38.p6 Ensembl392,689,426 - 92,690,158 (+)Ensembl
RefSeq Acc Id: XR_030776
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera394,392,827 - 94,395,461 (-)NCBI
RefSeq Acc Id: XR_034395
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv37392,492,476 - 92,495,109 (+)NCBI
RGD ID:6833855
Promoter ID:MM_KWN:35112
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:XR_030776_GM4202
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36392,493,321 - 92,493,821 (+)MPROMDB


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000091421 Ensembl, ENTREZGENE
MGD MGI:3782379 ENTREZGENE
NCBI Gene Gm4202 ENTREZGENE
PhenoGen Gm4202 PhenoGen