Gm13342 (predicted gene 13342) - Rat Genome Database

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Gene: Gm13342 (predicted gene 13342) Mus musculus
Analyze
Symbol: Gm13342
Name: predicted gene 13342
RGD ID: 2295866
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
Previously known as: predicted gene, OTTMUSG00000011511
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39222,415,104 - 22,415,563 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl222,415,336 - 22,415,542 (-)EnsemblGRCm39 Ensembl
GRCm38222,410,525 - 22,410,731 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl222,410,525 - 22,410,731 (-)EnsemblGRCm38mm10GRCm38
MGSCv37222,332,152 - 22,332,358 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36222,331,906 - 22,332,387 (-)NCBIMGSCv36mm8
Celera222,258,958 - 22,259,164 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map215.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:44
Interacting mature miRNAs:45
Transcripts:ENSMUST00000121055
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001477173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003086222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000121055
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl222,415,336 - 22,415,542 (-)Ensembl
GRCm38.p6 Ensembl222,410,525 - 22,410,731 (-)Ensembl
RefSeq Acc Id: XM_001477173   ⟹   XP_001477223
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38222,410,525 - 22,410,731 (-)ENTREZGENE
MGSCv37222,332,152 - 22,332,358 (-)RGD
cM Map2 ENTREZGENE
RefSeq Acc Id: XM_003086222   ⟹   XP_003086270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera222,258,958 - 22,259,164 (-)RGD
Protein Sequences
Protein RefSeqs XP_001477223 (Get FASTA)   NCBI Sequence Viewer  
  XP_003086270 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_001477223   ⟸   XM_001477173
RefSeq Acc Id: XP_003086270   ⟸   XM_003086222


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082516 Ensembl
MGD MGI:3650441 ENTREZGENE
NCBI Gene Gm13342 ENTREZGENE
PhenoGen Gm13342 PhenoGen