Gm11964 (predicted gene 11964) - Rat Genome Database

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Gene: Gm11964 (predicted gene 11964) Mus musculus
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Symbol: Gm11964
Name: predicted gene 11964
RGD ID: 2295736
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: endothelial differentiation-related factor 1-like; predicted gene, OTTMUSG00000005089
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,584,121 - 5,584,635 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl115,584,139 - 5,584,582 (+)EnsemblGRCm39 Ensembl
GRCm38115,634,124 - 5,634,633 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,634,139 - 5,634,582 (+)EnsemblGRCm38mm10GRCm38
MGSCv37115,534,142 - 5,534,585 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36115,534,063 - 5,534,774 (+)NCBIMGSCv36mm8
Celera116,125,788 - 6,126,231 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map113.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:37196079  



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Variants in Gm11964
13 total Variants

Predicted Target Of
Summary Value
Count of predictions:220
Count of miRNA genes:210
Interacting mature miRNAs:220
Transcripts:ENSMUST00000120982
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27095925Pglq5_mpelvic girdle length QTL 5, 5 week (mouse)11325000019750000Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse

1 to 10 of 19 rows
RH124859  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38225,561,016 - 25,562,009UniSTSGRCm38
GRCm38115,634,474 - 5,634,679UniSTSGRCm38
MGSCv37115,534,477 - 5,534,682UniSTSGRCm37
MGSCv37225,416,536 - 25,417,529UniSTSGRCm37
Celera116,126,123 - 6,126,328UniSTS
Celera225,288,783 - 25,289,776UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map2A3UniSTS
RH125844  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38225,561,025 - 25,562,062UniSTSGRCm38
GRCm38115,634,483 - 5,634,731UniSTSGRCm38
MGSCv37115,534,486 - 5,534,734UniSTSGRCm37
MGSCv37225,416,545 - 25,417,582UniSTSGRCm37
Celera116,126,132 - 6,126,380UniSTS
Celera225,288,792 - 25,289,829UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map2A3UniSTS
Whitehead/MRC_RH1129.72UniSTS






RefSeq Transcripts XM_036157122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL669935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000120982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl115,584,139 - 5,584,582 (+)Ensembl
GRCm38.p6 Ensembl115,634,139 - 5,634,582 (+)Ensembl
RefSeq Acc Id: XM_036157122   ⟹   XP_036013015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39115,584,121 - 5,584,635 (+)NCBI
Sequence:
Protein RefSeqs XP_036013015 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_036013015   ⟸   XM_036157122



Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000081021 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000120982 ENTREZGENE
MGD MGI:3652241 ENTREZGENE
NCBI Gene 665181 ENTREZGENE
PhenoGen Gm11964 PhenoGen