Gm12097 (predicted gene 12097) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gm12097 (predicted gene 12097) Mus musculus
Analyze
Symbol: Gm12097
Name: predicted gene 12097
RGD ID: 2294539
MGI Page MGI
Description:
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391130,522,794 - 30,524,454 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1130,522,791 - 30,524,454 (-)EnsemblGRCm39 Ensembl
GRCm381130,572,791 - 30,574,454 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1130,572,791 - 30,574,454 (-)EnsemblGRCm38mm10GRCm38
MGSCv371130,471,220 - 30,474,454 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361130,471,220 - 30,474,454 (-)NCBIMGSCv36mm8
Cytogenetic Map11A4NCBI
cM Map1118.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




.

.
Variants in Gm12097
51 total Variants

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:121
Interacting mature miRNAs:124
Transcripts:ENSMUST00000121523
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 59 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse

1 to 10 of 59 rows
09.MMHAP10FC3.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381130,576,173 - 30,576,362UniSTSGRCm38
MGSCv371130,476,173 - 30,476,362UniSTSGRCm37
Cytogenetic Map11A4UniSTS
Whitehead_YAC11 UniSTS






RefSeq Transcripts XR_001874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000121523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1130,522,791 - 30,524,454 (-)Ensembl
GRCm38.p6 Ensembl1130,572,791 - 30,574,454 (-)Ensembl
RefSeq Acc Id: XR_001874
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv371130,471,220 - 30,474,454 (-)RGD


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000081887 Ensembl
MGD MGI:3651582 ENTREZGENE
NCBI Gene Gm12097 ENTREZGENE
PhenoGen Gm12097 PhenoGen