Gm11604 (predicted gene 11604) - Rat Genome Database

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Gene: Gm11604 (predicted gene 11604) Mus musculus
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Symbol: Gm11604
Name: predicted gene 11604
RGD ID: 2294340
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: Rps6  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391198,076,151 - 98,076,973 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1198,076,192 - 98,076,933 (+)EnsemblGRCm39 Ensembl
GRCm381198,185,325 - 98,186,147 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1198,185,366 - 98,186,107 (+)EnsemblGRCm38mm10GRCm38
MGSCv371198,046,639 - 98,047,461 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361198,001,456 - 98,002,247 (+)NCBIMGSCv36mm8
Celera11107,840,310 - 107,841,132 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.75NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm11604
22 total Variants

Predicted Target Of
Summary Value
Count of predictions:84
Count of miRNA genes:79
Interacting mature miRNAs:82
Transcripts:ENSMUST00000121487
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 58 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse

1 to 10 of 58 rows





RefSeq Transcripts NG_013052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL591205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000121487
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1198,076,192 - 98,076,933 (+)Ensembl
GRCm38.p6 Ensembl1198,185,366 - 98,186,107 (+)Ensembl


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000085897 Ensembl, ENTREZGENE
MGD MGI:3651795 ENTREZGENE
NCBI Gene 666613 ENTREZGENE
PhenoGen Gm11604 PhenoGen