Gm8258 (predicted gene 8258) - Rat Genome Database

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Gene: Gm8258 (predicted gene 8258) Mus musculus
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Symbol: Gm8258
Name: predicted gene 8258
RGD ID: 2294253
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG666726
Related Functional Gene: Txlng  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395104,923,637 - 104,927,264 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5104,923,645 - 104,925,093 (+)EnsemblGRCm39 Ensembl
GRCm385104,775,771 - 104,779,398 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5104,775,779 - 104,777,227 (+)EnsemblGRCm38mm10GRCm38
MGSCv375105,204,906 - 105,206,246 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365105,016,189 - 105,019,720 (+)NCBIMGSCv36mm8
Celera585,804,970 - 85,806,310 (-)NCBICelera
Cytogenetic Map5E5NCBI
cM Map550.68NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:14610273  



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Variants in Gm8258
52 total Variants

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:46
Interacting mature miRNAs:46
Transcripts:ENSMUST00000055593
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 61 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse

1 to 10 of 61 rows
RH141702  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385104,778,953 - 104,779,160UniSTSGRCm38
GRCm38X162,779,158 - 162,779,365UniSTSGRCm38
MGSCv37X159,217,090 - 159,217,297UniSTSGRCm37
MGSCv375105,207,972 - 105,208,179UniSTSGRCm37
CeleraX146,004,359 - 146,004,566UniSTS
Cytogenetic MapXF4UniSTS
Cytogenetic Map5E5UniSTS






RefSeq Transcripts NG_028459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_888496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000055593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5104,923,645 - 104,925,093 (+)Ensembl
GRCm38.p6 Ensembl5104,775,779 - 104,777,227 (+)Ensembl
RefSeq Acc Id: XR_888496
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera585,804,895 - 85,806,348 (-)NCBI


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000048334 Ensembl
MGD MGI:3644429 ENTREZGENE
NCBI Gene 666726 ENTREZGENE
PhenoGen Gm8258 PhenoGen