Mmp24os1 (matrix metallopeptidase 24 opposite strand transcript 1) - Rat Genome Database

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Gene: Mmp24os1 (matrix metallopeptidase 24 opposite strand transcript 1) Mus musculus
Analyze
Symbol: Mmp24os1
Name: matrix metallopeptidase 24 opposite strand transcript 1
RGD ID: 2292338
MGI Page MGI
Description: Orthologous to human MMP24OS (MMP24 opposite strand).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: uncharacterized protein LOC613262
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,659,650 - 155,661,152 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,659,650 - 155,661,346 (-)EnsemblGRCm39 Ensembl
GRCm382155,817,730 - 155,819,232 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,817,730 - 155,819,426 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,643,466 - 155,644,939 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera2161,750,257 - 161,751,730 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15782199   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
Mmp24os1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,659,650 - 155,661,152 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,659,650 - 155,661,346 (-)EnsemblGRCm39 Ensembl
GRCm382155,817,730 - 155,819,232 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2155,817,730 - 155,819,426 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,643,466 - 155,644,939 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera2161,750,257 - 161,751,730 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.26NCBI
MMP24OS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,276,352 - 35,278,122 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2035,201,745 - 35,278,131 (-)EnsemblGRCh38hg38GRCh38
GRCh372033,864,155 - 33,865,925 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map20q11.22NCBI
HuRef2030,641,559 - 30,643,383 (-)NCBIHuRef
CHM1_12033,765,214 - 33,767,038 (-)NCBICHM1_1
T2T-CHM13v2.02036,997,214 - 36,998,984 (-)NCBIT2T-CHM13v2.0
Mmp24os
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,783,060 - 164,784,573 (-)NCBIGRCr8
mRatBN7.23144,322,936 - 144,324,449 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx3148,188,333 - 148,189,840 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03156,805,600 - 156,807,107 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,545,120 - 154,546,627 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Cytogenetic Map3q42NCBI
MMP24OS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,010,786 - 41,012,640 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,004,465 - 41,005,744 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,601,209 - 31,607,953 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MMP24OS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2423,887,164 - 23,905,021 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02424,933,428 - 24,951,301 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12424,220,294 - 24,238,154 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,315,308 - 24,333,169 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02424,754,410 - 24,772,267 (-)NCBIUU_Cfam_GSD_1.0
Mmp24os
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,270,398 - 173,271,411 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,478,355 - 5,478,594 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
MMP24OS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,183,585 - 56,185,040 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660872,333,653 - 2,335,423 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:181
Count of miRNA genes:177
Interacting mature miRNAs:181
Transcripts:ENSMUST00000124586
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
13825247Agoc2_magouti coat color QTL 2 (mouse)2151841920159841920Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
1558842Tailq2_mtail length QTL 2 (mouse)Not determined2151640941162737074Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
10412080Hylaq2_mHyperlocomotor activity related QTL 2 (mouse)Not determined2151640941164119146Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1357862Epfq1_mepididymal fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143773445165665019Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152699221169117924Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301588Hrec_mhemotopoietic response to early cytokines (mouse)Not determined2154553217159428450Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
1558852Gnf2_mgrowth and fatness 2 (mouse)Not determined2152699221162197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
4141033Wg2d_mweight gain in high growth mice 2d (mouse)Not determined143773445160303008Mouse
1357772Scfq1_msubcutaneous fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
13524521Bodwtq2_mbody wweight QTL 2 (mouse)2153456184156386184Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
13504830Bacsq1_mbaculum shape QTL 1 (mouse)2145716184161016184Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133144911167145058Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133144911167145058Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse

Markers in Region
RH130292  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382155,819,874 - 155,820,033UniSTSGRCm38
MGSCv372155,645,610 - 155,645,769UniSTSGRCm37
Celera2161,752,401 - 161,752,560UniSTS
Cytogenetic Map2H1UniSTS
AU040325  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382155,817,790 - 155,817,908UniSTSGRCm38
MGSCv372155,643,526 - 155,643,644UniSTSGRCm37
Celera2161,750,317 - 161,750,435UniSTS
Cytogenetic Map2H1UniSTS
cM Map287.5UniSTS
Whitehead/MRC_RH21820.13UniSTS
RH124789  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382155,819,884 - 155,819,994UniSTSGRCm38
MGSCv372155,645,620 - 155,645,730UniSTSGRCm37
Celera2161,752,411 - 161,752,521UniSTS
Cytogenetic Map2H1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000124586   ⟹   ENSMUSP00000145349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,659,650 - 155,661,346 (-)Ensembl
GRCm38.p6 Ensembl2155,817,730 - 155,819,426 (-)Ensembl
RefSeq Acc Id: NM_001384169   ⟹   NP_001371098
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392155,659,650 - 155,661,152 (-)NCBI
GRCm382155,817,730 - 155,819,232 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001371098 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAE35067 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000145349
  ENSMUSP00000145349.2
RefSeq Acc Id: NP_001371098   ⟸   NM_001384169
- UniProtKB: A0A0N4SW31 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000145349   ⟸   ENSMUST00000124586

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0N4SW31-F1-model_v2 AlphaFold A0A0N4SW31 1-51 view protein structure

Promoters
RGD ID:6879372
Promoter ID:EPDNEW_M3137
Type:initiation region
Name:BC029722_1
Description:Mus musculus cDNA sequence BC029722 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382155,819,207 - 155,819,267EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3584273 AgrOrtholog
Ensembl Genes ENSMUSG00000074649 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000124586 ENTREZGENE
  ENSMUST00000124586.2 UniProtKB/TrEMBL
MGD MGI:3584273 ENTREZGENE
NCBI Gene 613262 ENTREZGENE
PhenoGen Mmp24os1 PhenoGen
UniProt A0A0N4SW31 ENTREZGENE, UniProtKB/TrEMBL
  Q3TX49_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-24 Mmp24os1  matrix metallopeptidase 24 opposite strand transcript 1  BC029722  cDNA sequence BC029722  Symbol and/or name updated 27372883 PROVISIONAL