LOC101721133 (melanoma-associated antigen 10) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC101721133 (melanoma-associated antigen 10) Heterocephalus glaber
Analyze
Symbol: LOC101721133
Name: melanoma-associated antigen 10
RGD ID: 18936407
Description: INVOLVED IN negative regulation of transcription by RNA polymerase II (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248832,754,910 - 2,757,256 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004871073   ⟹   XP_004871130
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248832,754,910 - 2,757,256 (-)NCBI
RefSeq Acc Id: XM_021249173   ⟹   XP_021104832
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248832,754,910 - 2,757,256 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004871130 (Get FASTA)   NCBI Sequence Viewer  
  XP_021104832 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB05636 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00100051156
RefSeq Acc Id: XP_021104832   ⟸   XM_021249173
- UniProtKB: G5B8M5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004871130   ⟸   XM_004871073
- UniProtKB: G5B8M5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00100047155 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00100090649 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1200 UniProtKB/TrEMBL
  1.10.10.1210 UniProtKB/TrEMBL
InterPro MAGE UniProtKB/TrEMBL
  MAGE_WH1 UniProtKB/TrEMBL
  MAGE_WH2 UniProtKB/TrEMBL
  MHD_dom UniProtKB/TrEMBL
KEGG Report hgl:101721133 UniProtKB/TrEMBL
NCBI Gene LOC101721133 ENTREZGENE
PANTHER PTHR11736 UniProtKB/TrEMBL
  PTHR11736:SF153 UniProtKB/TrEMBL
Pfam MAGE UniProtKB/TrEMBL
PROSITE MAGE UniProtKB/TrEMBL
SMART MAGE UniProtKB/TrEMBL
UniProt G5B8M5 ENTREZGENE, UniProtKB/TrEMBL