Spag6 (sperm associated antigen 6) - Rat Genome Database

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Gene: Spag6 (sperm associated antigen 6) Heterocephalus glaber
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Symbol: Spag6
Name: sperm associated antigen 6
RGD ID: 18935169
Description: ENCODES a protein that exhibits microtubule binding (inferred); INVOLVED IN epithelial cilium movement involved in extracellular fluid movement (inferred); filopodium assembly (inferred); neuron projection extension (inferred); FOUND IN acrosomal vesicle (inferred); axoneme (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sperm-associated antigen 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624796403,411 - 444,229 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624796380,564 - 444,709 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Spag6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624796403,411 - 444,229 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624796380,564 - 444,709 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SPAG6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381022,345,496 - 22,417,610 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1022,345,445 - 22,454,224 (+)EnsemblGRCh38hg38GRCh38
GRCh371022,634,425 - 22,706,539 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361022,674,405 - 22,746,545 (+)NCBINCBI36Build 36hg18NCBI36
Build 341022,674,404 - 22,746,544NCBI
Celera1022,322,124 - 22,394,264 (+)NCBICelera
Cytogenetic Map10p12.2NCBI
HuRef1022,295,577 - 22,367,443 (+)NCBIHuRef
CHM1_11022,634,824 - 22,707,037 (+)NCBICHM1_1
T2T-CHM13v2.01022,364,530 - 22,436,652 (+)NCBIT2T-CHM13v2.0
Spag6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39218,698,808 - 18,754,561 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl218,698,843 - 18,755,224 (+)EnsemblGRCm39 Ensembl
GRCm38218,694,011 - 18,749,746 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl218,694,032 - 18,750,413 (+)EnsemblGRCm38mm10GRCm38
MGSCv37218,620,649 - 18,671,232 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36218,616,755 - 18,667,396 (+)NCBIMGSCv36mm8
Celera218,590,932 - 18,641,824 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map212.9NCBI
Spag6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81786,258,418 - 86,309,922 (+)NCBIGRCr8
mRatBN7.21781,352,372 - 81,401,504 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1781,349,084 - 81,401,501 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1784,826,849 - 84,874,690 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01788,662,249 - 88,710,086 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01782,678,991 - 82,726,823 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01785,382,314 - 85,437,976 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1785,382,116 - 85,437,975 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01787,104,190 - 87,165,398 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41792,802,047 - 92,850,239 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1780,634,218 - 80,682,001 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
Spag6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955429625,601 - 662,804 (-)NCBIChiLan1.0ChiLan1.0
SPAG6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2835,023,187 - 35,096,813 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11035,028,512 - 35,102,192 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01022,502,032 - 22,574,184 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11022,877,396 - 22,949,504 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1022,877,396 - 22,949,504 (+)Ensemblpanpan1.1panPan2
SPAG6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1210,737,260 - 10,804,080 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl210,738,062 - 10,803,967 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha29,430,764 - 9,497,372 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.028,936,863 - 9,003,913 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl28,936,865 - 9,004,327 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.128,300,540 - 8,367,669 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.028,385,338 - 8,451,871 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.028,552,791 - 8,619,665 (-)NCBIUU_Cfam_GSD_1.0
Spag6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934422,266,887 - 22,332,618 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365205,628,598 - 5,693,598 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365205,628,576 - 5,693,590 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPAG6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1052,494,755 - 52,571,990 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11052,496,457 - 52,571,977 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21058,151,626 - 58,226,634 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPAG6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1922,119,230 - 22,184,374 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl922,119,281 - 22,184,397 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605127,862,195 - 27,928,702 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000007156   ⟹   ENSHGLP00000007072
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624796403,411 - 444,134 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000007157   ⟹   ENSHGLP00000007073
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624796404,275 - 444,229 (-)Ensembl
RefSeq Acc Id: XM_004859872   ⟹   XP_004859929
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796380,572 - 444,702 (-)NCBI
RefSeq Acc Id: XM_004859873   ⟹   XP_004859930
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796403,397 - 444,691 (-)NCBI
RefSeq Acc Id: XM_004859875   ⟹   XP_004859932
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796380,571 - 444,702 (-)NCBI
RefSeq Acc Id: XM_004859876   ⟹   XP_004859933
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796384,476 - 444,694 (-)NCBI
RefSeq Acc Id: XM_004859878   ⟹   XP_004859935
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796380,564 - 444,709 (-)NCBI
RefSeq Acc Id: XM_021240467   ⟹   XP_021096126
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796380,566 - 444,031 (-)NCBI
RefSeq Acc Id: XM_021240468   ⟹   XP_021096127
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796380,567 - 444,031 (-)NCBI
RefSeq Acc Id: XM_021240469   ⟹   XP_021096128
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796403,397 - 444,701 (-)NCBI
RefSeq Acc Id: XP_004859935   ⟸   XM_004859878
- Peptide Label: isoform X7
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096126   ⟸   XM_021240467
- Peptide Label: isoform X3
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096127   ⟸   XM_021240468
- Peptide Label: isoform X5
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859932   ⟸   XM_004859875
- Peptide Label: isoform X4
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859929   ⟸   XM_004859872
- Peptide Label: isoform X1
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859933   ⟸   XM_004859876
- Peptide Label: isoform X6
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096128   ⟸   XM_021240469
- Peptide Label: isoform X8
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859930   ⟸   XM_004859873
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J2B1 (UniProtKB/TrEMBL),   G5C4E4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000007072   ⟸   ENSHGLT00000007156
Ensembl Acc Id: ENSHGLP00000007073   ⟸   ENSHGLT00000007157


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005164 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007157 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  HEAT UniProtKB/TrEMBL
NCBI Gene Spag6 ENTREZGENE
PANTHER SPERM-ASSOCIATED ANTIGEN 6 UniProtKB/TrEMBL
  SPERM-ASSOCIATED ANTIGEN 6 ARMADILLO REPEAT-CONTAINING UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
  HEAT UniProtKB/TrEMBL
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A0P6J2B1 ENTREZGENE, UniProtKB/TrEMBL
  G5C4E4 ENTREZGENE, UniProtKB/TrEMBL