Spag6 (sperm associated antigen 6) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Spag6 (sperm associated antigen 6) Heterocephalus glaber
Analyze
Symbol: Spag6
Name: sperm associated antigen 6
RGD ID: 18935169
Description: ENCODES a protein that exhibits microtubule binding (inferred); INVOLVED IN epithelial cilium movement involved in extracellular fluid movement (inferred); filopodium assembly (inferred); neuron projection extension (inferred); FOUND IN acrosomal vesicle (inferred); axoneme (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sperm-associated antigen 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624796403,411 - 444,229 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624796380,564 - 444,709 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Spag6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624796403,411 - 444,229 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624796380,564 - 444,709 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SPAG6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381022,345,496 - 22,417,610 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1022,345,445 - 22,454,224 (+)EnsemblGRCh38hg38GRCh38
GRCh371022,634,425 - 22,706,539 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361022,674,405 - 22,746,545 (+)NCBINCBI36Build 36hg18NCBI36
Build 341022,674,404 - 22,746,544NCBI
Celera1022,322,124 - 22,394,264 (+)NCBICelera
Cytogenetic Map10p12.2NCBI
HuRef1022,295,577 - 22,367,443 (+)NCBIHuRef
CHM1_11022,634,824 - 22,707,037 (+)NCBICHM1_1
T2T-CHM13v2.01022,364,530 - 22,436,652 (+)NCBIT2T-CHM13v2.0
Spag6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39218,698,808 - 18,754,561 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl218,698,843 - 18,755,224 (+)EnsemblGRCm39 Ensembl
GRCm38218,694,011 - 18,749,746 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl218,694,032 - 18,750,413 (+)EnsemblGRCm38mm10GRCm38
MGSCv37218,620,649 - 18,671,232 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36218,616,755 - 18,667,396 (+)NCBIMGSCv36mm8
Celera218,590,932 - 18,641,824 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map212.9NCBI
Spag6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81786,258,418 - 86,309,922 (+)NCBIGRCr8
mRatBN7.21781,352,372 - 81,401,504 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1781,349,084 - 81,401,501 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1784,826,849 - 84,874,690 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01788,662,249 - 88,710,086 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01782,678,991 - 82,726,823 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01785,382,314 - 85,437,976 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1785,382,116 - 85,437,975 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01787,104,190 - 87,165,398 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41792,802,047 - 92,850,239 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1780,634,218 - 80,682,001 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
Spag6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955429625,601 - 662,804 (-)NCBIChiLan1.0ChiLan1.0
SPAG6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2835,023,187 - 35,096,813 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11035,028,512 - 35,102,192 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01022,502,032 - 22,574,184 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11022,877,396 - 22,949,504 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1022,877,396 - 22,949,504 (+)Ensemblpanpan1.1panPan2
SPAG6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1210,737,260 - 10,804,080 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl210,738,062 - 10,803,967 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha29,430,764 - 9,497,372 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.028,936,863 - 9,003,913 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl28,936,865 - 9,004,327 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.128,300,540 - 8,367,669 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.028,385,338 - 8,451,871 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.028,552,791 - 8,619,665 (-)NCBIUU_Cfam_GSD_1.0
Spag6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934422,266,887 - 22,332,618 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365205,628,598 - 5,693,598 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365205,628,576 - 5,693,590 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPAG6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1052,494,755 - 52,571,990 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11052,496,457 - 52,571,977 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21058,151,626 - 58,226,634 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPAG6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1922,119,230 - 22,184,374 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl922,119,281 - 22,184,397 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605127,862,195 - 27,928,702 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000007156   ⟹   ENSHGLP00000007072
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624796403,411 - 444,134 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000007157   ⟹   ENSHGLP00000007073
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624796404,275 - 444,229 (-)Ensembl
RefSeq Acc Id: XM_004859872   ⟹   XP_004859929
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796380,572 - 444,702 (-)NCBI
RefSeq Acc Id: XM_004859873   ⟹   XP_004859930
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796403,397 - 444,691 (-)NCBI
RefSeq Acc Id: XM_004859875   ⟹   XP_004859932
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796380,571 - 444,702 (-)NCBI
RefSeq Acc Id: XM_004859876   ⟹   XP_004859933
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796384,476 - 444,694 (-)NCBI
RefSeq Acc Id: XM_004859878   ⟹   XP_004859935
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796380,564 - 444,709 (-)NCBI
RefSeq Acc Id: XM_021240467   ⟹   XP_021096126
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796380,566 - 444,031 (-)NCBI
RefSeq Acc Id: XM_021240468   ⟹   XP_021096127
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796380,567 - 444,031 (-)NCBI
RefSeq Acc Id: XM_021240469   ⟹   XP_021096128
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624796403,397 - 444,701 (-)NCBI
RefSeq Acc Id: XP_004859935   ⟸   XM_004859878
- Peptide Label: isoform X7
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096126   ⟸   XM_021240467
- Peptide Label: isoform X3
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096127   ⟸   XM_021240468
- Peptide Label: isoform X5
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859932   ⟸   XM_004859875
- Peptide Label: isoform X4
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859929   ⟸   XM_004859872
- Peptide Label: isoform X1
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859933   ⟸   XM_004859876
- Peptide Label: isoform X6
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096128   ⟸   XM_021240469
- Peptide Label: isoform X8
- UniProtKB: G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859930   ⟸   XM_004859873
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J2B1 (UniProtKB/TrEMBL),   G5C4E4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000007072   ⟸   ENSHGLT00000007156
RefSeq Acc Id: ENSHGLP00000007073   ⟸   ENSHGLT00000007157


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005164 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000007157 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  HEAT UniProtKB/TrEMBL
NCBI Gene Spag6 ENTREZGENE
PANTHER SPERM-ASSOCIATED ANTIGEN 6 UniProtKB/TrEMBL
  SPERM-ASSOCIATED ANTIGEN 6 ARMADILLO REPEAT-CONTAINING UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
  HEAT UniProtKB/TrEMBL
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A0P6J2B1 ENTREZGENE, UniProtKB/TrEMBL
  G5C4E4 ENTREZGENE, UniProtKB/TrEMBL