Tomt (transmembrane O-methyltransferase) - Rat Genome Database

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Gene: Tomt (transmembrane O-methyltransferase) Heterocephalus glaber
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Symbol: Tomt
Name: transmembrane O-methyltransferase
RGD ID: 18934705
Description: ENCODES a protein that exhibits catechol O-methyltransferase activity (inferred); methyltransferase activity (inferred); O-methyltransferase activity (inferred); INVOLVED IN catecholamine catabolic process (inferred); catecholamine metabolic process (inferred); developmental process (inferred); FOUND IN endoplasmic reticulum (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LRTOMT; transmembrane O-methyltransferase isoform LRTOMT2a; transmembrane O-methyltransferase-like
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248174,863,128 - 4,869,271 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248174,866,596 - 4,871,697 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000025396   ⟹   ENSHGLP00000025174
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248174,863,128 - 4,869,271 (-)Ensembl
RefSeq Acc Id: NM_001282110   ⟹   NP_001269039
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248174,867,061 - 4,869,256 (-)NCBI
RefSeq Acc Id: XM_021243175   ⟹   XP_021098834
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248174,866,596 - 4,871,697 (-)NCBI
RefSeq Acc Id: XM_021243176   ⟹   XP_021098835
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248174,866,596 - 4,870,614 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001269039 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098834 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098835 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB01146 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025174
GenBank Protein JAO01345 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021098834   ⟸   XM_021243175
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RS20 (UniProtKB/TrEMBL),   A0A0P6JIT0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098835   ⟸   XM_021243176
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RS20 (UniProtKB/TrEMBL),   A0A0P6JIT0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001269039   ⟸   NM_001282110
- UniProtKB: G5AVT5 (UniProtKB/TrEMBL),   A0A0P6JIT0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000025174   ⟸   ENSHGLT00000025396


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017935 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000025396 ENTREZGENE
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
InterPro SAM-dependent_MTases UniProtKB/TrEMBL
  SAM_O-MeTrfase UniProtKB/TrEMBL
KEGG Report hgl:101700140 UniProtKB/TrEMBL
NCBI Gene Tomt ENTREZGENE
PANTHER CATECHOL O-METHYLTRANSFERASE 1-RELATED UniProtKB/TrEMBL
  PTHR43836:SF1 UniProtKB/TrEMBL
Pfam Methyltransf_3 UniProtKB/TrEMBL
PROSITE SAM_OMT_I UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt A0A0P6JIT0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RS20 ENTREZGENE, UniProtKB/TrEMBL
  G5AVT5 ENTREZGENE, UniProtKB/TrEMBL