Fam181b (family with sequence similarity 181 member B) - Rat Genome Database

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Gene: Fam181b (family with sequence similarity 181 member B) Heterocephalus glaber
Analyze
Symbol: Fam181b
Name: family with sequence similarity 181 member B
RGD ID: 18934656
Description: ASSOCIATED WITH intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein FAM181B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248457,174,693 - 7,175,949 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248457,174,243 - 7,176,186 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
Fam181b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248457,174,693 - 7,175,949 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248457,174,243 - 7,176,186 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FAM181B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381182,729,940 - 82,733,864 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1182,729,940 - 82,733,864 (-)EnsemblGRCh38hg38GRCh38
GRCh371182,440,982 - 82,444,906 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361182,120,694 - 82,122,554 (-)NCBINCBI36Build 36hg18NCBI36
Celera1179,752,906 - 79,754,766 (-)NCBICelera
Cytogenetic Map11q14.1NCBI
HuRef1178,740,310 - 78,742,170 (-)NCBIHuRef
CHM1_11182,327,034 - 82,328,894 (-)NCBICHM1_1
T2T-CHM13v2.01182,666,398 - 82,670,322 (-)NCBIT2T-CHM13v2.0
Fam181b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39792,729,087 - 92,730,929 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl792,729,073 - 92,731,074 (+)EnsemblGRCm39 Ensembl
GRCm38793,079,879 - 93,081,722 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl793,079,865 - 93,081,867 (+)EnsemblGRCm38mm10GRCm38
MGSCv377100,228,389 - 100,230,232 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36792,955,111 - 92,956,914 (+)NCBIMGSCv36mm8
Celera790,359,125 - 90,360,963 (+)NCBICelera
Cytogenetic Map7E1NCBI
cM Map751.66NCBI
Fam181b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81156,578,821 - 156,580,318 (+)NCBIGRCr8
mRatBN7.21147,166,428 - 147,167,925 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1147,149,447 - 147,168,298 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1147,124,740 - 147,168,298 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1155,118,556 - 155,120,053 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01162,298,738 - 162,300,235 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01155,172,213 - 155,173,710 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01157,920,786 - 157,922,283 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1157,920,786 - 157,922,274 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01164,164,156 - 164,165,653 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41149,955,641 - 149,957,138 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1145,344,573 - 145,346,070 (+)NCBICelera
Cytogenetic Map1q32NCBI
Fam181b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554149,798,441 - 9,800,232 (+)NCBIChiLan1.0ChiLan1.0
FAM181B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2983,662,436 - 83,668,793 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11184,713,661 - 84,717,591 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01177,796,801 - 77,800,010 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11181,409,866 - 81,415,350 (-)NCBIpanpan1.1PanPan1.1panPan2
FAM181B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12116,355,669 - 16,357,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2116,355,847 - 16,357,249 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2116,233,421 - 16,235,033 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02116,544,371 - 16,546,114 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2116,544,418 - 16,545,719 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12116,318,794 - 16,320,537 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02116,399,404 - 16,401,145 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02116,469,287 - 16,471,030 (+)NCBIUU_Cfam_GSD_1.0
FAM181B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl916,921,724 - 16,923,001 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1916,921,290 - 16,923,142 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2918,783,549 - 18,785,401 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM181B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1173,924,794 - 73,927,035 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl173,925,227 - 73,926,507 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604351,780,802 - 51,782,973 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004868281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01088674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000028776   ⟹   ENSHGLP00000028328
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248457,174,693 - 7,175,949 (+)Ensembl
RefSeq Acc Id: XM_004868281   ⟹   XP_004868338
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248457,174,243 - 7,176,186 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004868338 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000028328
RefSeq Acc Id: XP_004868338   ⟸   XM_004868281
- UniProtKB: A0AAX6Q916 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000028328   ⟸   ENSHGLT00000028776


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000020566 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000028776 ENTREZGENE
InterPro FAM181 UniProtKB/TrEMBL
  TEADIR3_omega_loop UniProtKB/TrEMBL
NCBI Gene Fam181b ENTREZGENE
PANTHER PROTEIN FAM181B UniProtKB/TrEMBL
  PROTEIN FAM181B UniProtKB/TrEMBL
Pfam TEADIR3 UniProtKB/TrEMBL
UniProt A0AAX6Q916 ENTREZGENE, UniProtKB/TrEMBL