LOC101699962 (olfactory receptor 2B11) - Rat Genome Database

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Gene: LOC101699962 (olfactory receptor 2B11) Heterocephalus glaber
Analyze
Symbol: LOC101699962
Name: olfactory receptor 2B11
RGD ID: 18933746
Description: ASSOCIATED WITH Cryopyrin-Associated Periodic Syndromes (ortholog); developmental and epileptic encephalopathy 54 (ortholog); gastrointestinal stromal tumor (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624937554,116 - 555,174 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC101699962
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624937554,116 - 555,174 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
OR2B11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381247,449,118 - 247,458,104 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1247,449,118 - 247,458,105 (-)EnsemblGRCh38hg38GRCh38
GRCh371247,612,420 - 247,621,406 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361245,680,954 - 245,681,907 (-)NCBINCBI36Build 36hg18NCBI36
Build 341243,940,371 - 243,941,325NCBI
Celera1220,913,080 - 220,914,033 (-)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1218,008,719 - 218,009,672 (-)NCBIHuRef
CHM1_11248,886,666 - 248,887,618 (-)NCBICHM1_1
T2T-CHM13v2.01246,885,761 - 246,894,749 (-)NCBIT2T-CHM13v2.0
Or2b11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391159,461,608 - 59,462,564 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1159,461,081 - 59,467,061 (-)EnsemblGRCm39 Ensembl
GRCm381159,570,782 - 59,571,738 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1159,570,255 - 59,576,235 (-)EnsemblGRCm38mm10GRCm38
MGSCv371159,384,284 - 59,385,240 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,106,882 - 60,107,838 (-)NCBIMGSCv36mm8
MGSCv361159,386,977 - 59,387,933 (-)NCBIMGSCv36mm8
Cytogenetic Map11B1.3NCBI
cM Map1137.74NCBI
Or2b11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81044,857,952 - 44,858,908 (-)NCBIGRCr8
mRatBN7.21044,358,397 - 44,359,353 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1044,357,668 - 44,362,937 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1049,053,192 - 49,054,148 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01048,543,550 - 48,544,506 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01044,047,160 - 44,048,116 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01045,921,715 - 45,924,257 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,922,873 - 45,923,829 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,679,357 - 45,681,442 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,880,119 - 45,881,075 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11045,893,741 - 45,894,698 (-)NCBI
Celera1043,620,188 - 43,621,144 (-)NCBICelera
Cytogenetic Map10q22NCBI
LOC100985210
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211,604,364 - 1,606,847 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111,877,678 - 1,878,631 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01223,086,246 - 223,088,103 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11228,539,430 - 228,540,576 (-)NCBIpanpan1.1PanPan1.1panPan2
OR2B11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.18378,558 - 379,517 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl8378,570 - 379,517 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha8404,339 - 405,298 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.08426,350 - 427,309 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl8426,362 - 427,309 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.18365,581 - 366,540 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.08327,663 - 328,622 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.08454,541 - 455,500 (-)NCBIUU_Cfam_GSD_1.0
LOC101965613
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721388,397,753 - 88,398,833 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936864739,080 - 740,057 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100515362
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl256,862,025 - 56,862,978 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1256,862,025 - 56,862,981 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2257,758,502 - 57,759,458 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103230929
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12584,465,229 - 84,468,061 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2584,465,283 - 84,466,233 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605586,849,702 - 86,852,338 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004874753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01105865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004874753   ⟹   XP_004874810
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624937554,116 - 555,174 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004874810 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004874810   ⟸   XM_004874753
- UniProtKB: A0AAX6QGI9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC101699962 ENTREZGENE
UniProt A0AAX6QGI9 ENTREZGENE, UniProtKB/TrEMBL