LOC101717240 (olfactory receptor 1468) - Rat Genome Database

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Gene: LOC101717240 (olfactory receptor 1468) Heterocephalus glaber
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Symbol: LOC101717240
Name: olfactory receptor 1468
RGD ID: 18931735
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247866,124,859 - 6,127,071 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101717240
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247866,124,859 - 6,127,071 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
OR1E2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38173,432,870 - 3,433,841 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl173,432,870 - 3,433,841 (-)EnsemblGRCh38hg38GRCh38
GRCh37173,336,164 - 3,337,135 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36173,282,914 - 3,283,885 (-)NCBINCBI36Build 36hg18NCBI36
Build 34173,282,913 - 3,283,885NCBI
Celera173,349,902 - 3,350,873 (-)NCBICelera
Cytogenetic Map17p13.2NCBI
HuRef173,228,673 - 3,229,644 (-)NCBIHuRef
CHM1_1173,345,795 - 3,346,766 (-)NCBICHM1_1
T2T-CHM13v2.0173,321,795 - 3,322,756 (-)NCBIT2T-CHM13v2.0
Or1e1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,262,072 - 73,266,530 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,262,072 - 73,268,662 (+)EnsemblGRCm39 Ensembl
GRCm381173,371,246 - 73,375,704 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,371,246 - 73,377,836 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,184,748 - 73,189,206 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361173,190,946 - 73,191,899 (+)NCBIMGSCv36mm8
Celera1180,908,199 - 80,912,657 (+)NCBICelera
Cytogenetic Map11B4NCBI
cM Map1145.32NCBI
Or1e1e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81059,252,890 - 59,253,825 (+)NCBIGRCr8
mRatBN7.21058,754,432 - 58,755,367 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1058,754,432 - 58,755,367 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1063,374,767 - 63,375,702 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01062,880,368 - 62,881,303 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01058,374,925 - 58,375,860 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01060,728,160 - 60,729,095 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1060,728,160 - 60,729,095 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01060,465,195 - 60,466,130 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41061,161,408 - 61,162,343 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11061,175,030 - 61,175,966 (+)NCBI
Celera1057,796,845 - 57,797,780 (+)NCBICelera
Cytogenetic Map10q24NCBI
LOC129394413
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21911,043,027 - 11,048,100 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11713,009,274 - 13,014,258 (-)NCBINHGRI_mPanPan1
LOC100517779
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11249,543,859 - 49,548,236 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21251,253,797 - 51,254,887 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103242153
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1162,945,702 - 2,947,679 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl162,946,477 - 2,947,421 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605918,946,965 - 18,948,087 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004857578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01062107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004857578   ⟹   XP_004857635
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247866,124,859 - 6,127,071 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004857635 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004857635   ⟸   XM_004857578
- UniProtKB: A0AAX6PRV7 (UniProtKB/TrEMBL),   G5B941 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC101717240 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 1E3 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0AAX6PRV7 ENTREZGENE, UniProtKB/TrEMBL
  G5B941 ENTREZGENE, UniProtKB/TrEMBL