Swt1 (SWT1 RNA endoribonuclease homolog) - Rat Genome Database

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Gene: Swt1 (SWT1 RNA endoribonuclease homolog) Heterocephalus glaber
Analyze
Symbol: Swt1
Name: SWT1 RNA endoribonuclease homolog
RGD ID: 18929862
Description: ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); megacolon (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcriptional protein SWT1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248148,300,836 - 8,394,444 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248148,300,886 - 8,398,617 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Swt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248148,300,836 - 8,394,444 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248148,300,886 - 8,398,617 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SWT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381185,157,060 - 185,291,781 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1185,157,080 - 185,291,781 (+)EnsemblGRCh38hg38GRCh38
GRCh371185,126,192 - 185,260,913 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361183,392,815 - 183,527,536 (+)NCBINCBI36Build 36hg18NCBI36
Build 341181,857,947 - 181,992,475NCBI
Celera1158,236,887 - 158,371,608 (+)NCBICelera
Cytogenetic Map1q25.3NCBI
HuRef1156,361,485 - 156,496,278 (+)NCBIHuRef
CHM1_11186,547,897 - 186,682,667 (+)NCBICHM1_1
T2T-CHM13v2.01184,513,970 - 184,648,685 (+)NCBIT2T-CHM13v2.0
Swt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391151,243,449 - 151,304,248 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1151,243,450 - 151,304,206 (-)EnsemblGRCm39 Ensembl
GRCm381151,367,698 - 151,428,497 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1151,367,699 - 151,428,455 (-)EnsemblGRCm38mm10GRCm38
MGSCv371153,214,829 - 153,275,565 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361153,129,917 - 153,190,599 (-)NCBIMGSCv36mm8
Celera1153,797,344 - 153,857,430 (-)NCBICelera
Cytogenetic Map1G1NCBI
cM Map164.08NCBI
Swt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81366,002,477 - 66,059,962 (-)NCBIGRCr8
mRatBN7.21363,452,494 - 63,509,982 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1363,452,496 - 63,509,980 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1366,072,174 - 66,129,602 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01367,336,795 - 67,394,220 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01364,599,708 - 64,657,304 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01368,728,266 - 68,785,800 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1368,728,266 - 68,785,771 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01373,690,645 - 73,748,003 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41366,242,346 - 66,300,776 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11366,257,108 - 66,314,860 (-)NCBI
Celera1363,383,391 - 63,440,840 (-)NCBICelera
Cytogenetic Map13q21NCBI
Swt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540623,772,095 - 23,860,360 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540623,772,192 - 23,861,365 (+)NCBIChiLan1.0ChiLan1.0
SWT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2164,429,806 - 64,565,793 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,113,414 - 64,249,363 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,681,681 - 160,817,733 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,833,840 - 164,970,144 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,833,911 - 164,970,144 (+)Ensemblpanpan1.1panPan2
SWT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1718,329,901 - 18,425,017 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl718,329,813 - 18,458,508 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha717,914,272 - 18,009,274 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0718,062,669 - 18,157,444 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl718,062,717 - 18,157,442 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1717,972,143 - 18,067,111 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0718,080,011 - 18,174,771 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0718,210,975 - 18,306,027 (+)NCBIUU_Cfam_GSD_1.0
Swt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934487,092,484 - 87,177,317 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364814,939,218 - 5,019,062 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364814,939,232 - 5,024,058 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SWT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9126,347,517 - 126,481,803 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19126,347,193 - 126,453,726 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29138,792,979 - 138,900,710 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SWT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12544,109,306 - 44,232,238 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2544,109,276 - 44,229,632 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605545,314,789 - 45,438,461 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000009202   ⟹   ENSHGLP00000009104
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248148,300,836 - 8,394,444 (-)Ensembl
RefSeq Acc Id: XM_013078901   ⟹   XP_012934355
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248148,300,886 - 8,398,617 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012934355 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000009104
RefSeq Acc Id: XP_012934355   ⟸   XM_013078901
- UniProtKB: G5ATN6 (UniProtKB/TrEMBL),   A0AAX6R7R7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000009104   ⟸   ENSHGLT00000009202


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006542 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000009202 ENTREZGENE
Gene3D-CATH 5'-nuclease UniProtKB/TrEMBL
InterPro PIN-like_dom_sf UniProtKB/TrEMBL
  PIN_dom UniProtKB/TrEMBL
  SWT1_Regulator UniProtKB/TrEMBL
NCBI Gene Swt1 ENTREZGENE
PANTHER TRANSCRIPTIONAL PROTEIN SWT1 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam PIN_4 UniProtKB/TrEMBL
SMART PINc UniProtKB/TrEMBL
Superfamily-SCOP PIN domain-like UniProtKB/TrEMBL
UniProt A0AAX6R7R7 ENTREZGENE, UniProtKB/TrEMBL
  G5ATN6 ENTREZGENE, UniProtKB/TrEMBL