LOC101717686 (5-hydroxytryptamine receptor 3E) - Rat Genome Database

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Gene: LOC101717686 (5-hydroxytryptamine receptor 3E) Heterocephalus glaber
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Symbol: LOC101717686
Name: 5-hydroxytryptamine receptor 3E
RGD ID: 18929475
Description: ENCODES a protein that exhibits extracellular ligand-gated monoatomic ion channel activity (inferred); transmembrane signaling receptor activity (inferred); INVOLVED IN monoatomic ion transmembrane transport (inferred); FOUND IN membrane (inferred); plasma membrane (inferred); postsynapse (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 5-hydroxytryptamine (serotonin) receptor 3E, ionotropic; Htr3e
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473072,441,300 - 72,450,283 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021253107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01003196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_021253107   ⟹   XP_021108766
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473072,441,300 - 72,450,283 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021108766 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021108766   ⟸   XM_021253107
- UniProtKB: G5BTE4 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH Neurotransmitter-gated ion-channel ligand-binding domain UniProtKB/TrEMBL
  Neurotransmitter-gated ion-channel transmembrane domain UniProtKB/TrEMBL
InterPro Neur_chan_lig-bd UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/TrEMBL
  Neur_channel UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/TrEMBL
NCBI Gene LOC101717686 ENTREZGENE
PANTHER 5-HYDROXYTRYPTAMINE RECEPTOR 3C UniProtKB/TrEMBL
  NEUROTRANSMITTER GATED ION CHANNEL UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/TrEMBL
PRINTS NRIONCHANNEL UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/TrEMBL
Superfamily-SCOP Neurotransmitter-gated ion-channel transmembrane pore UniProtKB/TrEMBL
  Nicotinic receptor ligand binding domain-like UniProtKB/TrEMBL
UniProt A0AAX6SH50_HETGA UniProtKB/TrEMBL
  G5BTE4 ENTREZGENE, UniProtKB/TrEMBL