LOC101697928 (high mobility group protein B1 pseudogene) - Rat Genome Database

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Gene: LOC101697928 (high mobility group protein B1 pseudogene) Heterocephalus glaber
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Symbol: LOC101697928 (Ensembl: HMGB1P1)
Name: high mobility group protein B1 pseudogene (Ensembl:high mobility group box 1 pseudogene 1)
RGD ID: 18928759
Description: ENCODES a pseudogene that exhibits DNA binding (inferred); INVOLVED IN autophagy (inferred); chemotaxis (inferred); DNA recombination (inferred); FOUND IN chromosome (inferred); endoplasmic reticulum-Golgi intermediate compartment (inferred); nucleus (inferred)
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247958,754,482 - 8,754,979 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247958,754,438 - 8,755,131 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
DNA binding  (IEA)

References

Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AHKG01067473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000028710   ⟹   ENSHGLP00000028274
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247958,754,482 - 8,754,979 (+)Ensembl
Protein Sequences
Ensembl Protein ENSHGLP00000028274
Ensembl Acc Id: ENSHGLP00000028274   ⟸   ENSHGLT00000028710


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000020500 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000028710 UniProtKB/TrEMBL
Gene3D-CATH High mobility group box domain UniProtKB/TrEMBL
InterPro HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  HMG_boxA_CS UniProtKB/TrEMBL
  HMGB UniProtKB/TrEMBL
NCBI Gene LOC101697928 ENTREZGENE
PANTHER HIGH MOBILITY GROUP PROTEIN B1 UniProtKB/TrEMBL
  HIGH MOBILITY GROUP PROTEIN DSP1 UniProtKB/TrEMBL
Pfam HMG_box UniProtKB/TrEMBL
  HMG_box_2 UniProtKB/TrEMBL
PRINTS HIGHMOBLTY12 UniProtKB/TrEMBL
PROSITE HMG_BOX_1 UniProtKB/TrEMBL
  HMG_BOX_2 UniProtKB/TrEMBL
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP HMG-box UniProtKB/TrEMBL
UniProt G5CB25_HETGA UniProtKB/TrEMBL