LOC101705264 (zinc finger protein 613) - Rat Genome Database

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Gene: LOC101705264 (zinc finger protein 613) Heterocephalus glaber
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Symbol: LOC101705264 (Ensembl: ZNF613)
Name: zinc finger protein 613
RGD ID: 18924038
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Znf613
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248323,121,750 - 3,136,904 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248323,119,953 - 3,136,903 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000021502   ⟹   ENSHGLP00000021296
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248323,121,750 - 3,136,904 (-)Ensembl
RefSeq Acc Id: XM_004866744   ⟹   XP_004866801
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248323,119,953 - 3,136,903 (-)NCBI
RefSeq Acc Id: XM_004866745   ⟹   XP_004866802
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248323,119,953 - 3,136,811 (-)NCBI
RefSeq Acc Id: XM_004866746   ⟹   XP_004866803
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248323,119,953 - 3,136,717 (-)NCBI
RefSeq Acc Id: XM_013066289   ⟹   XP_012921743
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248323,119,953 - 3,136,803 (-)NCBI
RefSeq Acc Id: XM_013066290   ⟹   XP_012921744
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248323,119,953 - 3,136,895 (-)NCBI
RefSeq Acc Id: XM_021245880   ⟹   XP_021101539
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248323,119,953 - 3,136,808 (-)NCBI
RefSeq Acc Id: XM_021245881   ⟹   XP_021101540
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248323,119,953 - 3,136,903 (-)NCBI
RefSeq Acc Id: XM_021245882   ⟹   XP_021101541
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248323,119,953 - 3,136,786 (-)NCBI
RefSeq Acc Id: XM_021245883   ⟹   XP_021101542
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248323,119,953 - 3,136,717 (-)NCBI
RefSeq Acc Id: XR_002389858
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248323,123,285 - 3,136,903 (-)NCBI
RefSeq Acc Id: XP_004866801   ⟸   XM_004866744
- UniProtKB: G5B3C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101540   ⟸   XM_021245881
- UniProtKB: G5B3C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012921744   ⟸   XM_013066290
- UniProtKB: G5B3C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004866802   ⟸   XM_004866745
- UniProtKB: G5B3C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101539   ⟸   XM_021245880
- UniProtKB: G5B3C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012921743   ⟸   XM_013066289
- UniProtKB: G5B3C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101541   ⟸   XM_021245882
- UniProtKB: G5B3C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004866803   ⟸   XM_004866746
- UniProtKB: G5B3C7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101542   ⟸   XM_021245883
- UniProtKB: G5B3C7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000021296   ⟸   ENSHGLT00000021502


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015217 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000021502 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC101705264 ENTREZGENE
PANTHER FI01424P-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt G5B3C7 ENTREZGENE, UniProtKB/TrEMBL