Prr15l (proline rich 15 like) - Rat Genome Database

Name: Prr15l
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Prr15l (proline rich 15 like) Heterocephalus glaber

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Symbol:

Prr15l

Name:

proline rich 15 like

RGD ID:

18911709

Description:

ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

proline-rich protein 15-like protein

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRR15L (proline rich 15 like)	NCBI	Ortholog
Mus musculus (house mouse):	Prr15l (proline rich 15-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Prr15l (proline rich 15-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Prr15l (proline rich 15 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PRR15L (proline rich 15 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRR15L (proline rich 15 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Prr15l (proline rich 15 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRR15L (proline rich 15 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRR15L (proline rich 15 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	4,583,586 - 4,588,222 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	4,583,569 - 4,588,185 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hereditary breast ovarian cancer syndrome (ISO)

References

Genomics

Comparative Map Data

Prr15l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	4,583,586 - 4,588,222 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	4,583,569 - 4,588,185 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

PRR15L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	47,951,967 - 47,957,883 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	47,951,967 - 47,957,883 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	46,029,333 - 46,035,249 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	43,384,332 - 43,390,109 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	42,482,154 - 42,487,934 (-)	NCBI		Celera
Cytogenetic Map	17	q21.32	NCBI
HuRef	17	41,398,011 - 41,403,923 (-)	NCBI		HuRef
CHM1_1	17	46,094,316 - 46,100,222 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	48,813,758 - 48,819,670 (-)	NCBI		T2T-CHM13v2.0

Prr15l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	96,816,987 - 96,826,474 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	96,818,930 - 96,828,656 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	96,926,161 - 96,937,833 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	96,928,104 - 96,937,830 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	96,790,638 - 96,796,962 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	96,745,414 - 96,751,738 (+)	NCBI		MGSCv36	mm8
Celera	11	106,577,353 - 106,583,547 (+)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	60.16	NCBI

Prr15l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	82,412,934 - 82,418,897 (+)	NCBI		GRCr8
mRatBN7.2	10	81,916,491 - 81,922,454 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	81,906,471 - 81,923,283 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	86,864,545 - 86,870,510 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	86,362,593 - 86,368,558 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	81,755,196 - 81,761,161 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	84,866,781 - 84,873,434 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	84,871,680 - 84,871,982 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	84,657,712 - 84,663,705 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	10	80,678,235 - 80,684,878 (+)	NCBI		Celera
Cytogenetic Map	10	q31	NCBI

Prr15l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	13,180,912 - 13,181,214 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	13,180,880 - 13,182,035 (+)	NCBI	ChiLan1.0	ChiLan1.0

PRR15L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	17,146,481 - 17,153,509 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	19,112,066 - 19,119,096 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	9,580,604 - 9,587,121 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	9,762,508 - 9,768,448 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	9,767,181 - 9,767,492 (+)	Ensembl	panpan1.1		panPan2

PRR15L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	24,262,266 - 24,268,289 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	24,263,155 - 24,263,460 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	23,728,443 - 23,734,466 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	25,055,738 - 25,061,756 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	25,056,625 - 25,056,930 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	23,825,657 - 23,831,927 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	24,086,639 - 24,092,656 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	24,213,171 - 24,219,179 (-)	NCBI		UU_Cfam_GSD_1.0

Prr15l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	23,701,777 - 23,707,646 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	13,371,740 - 13,372,042 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	13,367,411 - 13,373,462 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRR15L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	24,204,638 - 24,204,940 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	24,203,811 - 24,210,105 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	24,002,408 - 24,003,556 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRR15L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	68,351,811 - 68,360,522 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	68,352,766 - 68,353,077 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	39,403,879 - 39,410,156 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_004859578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01067367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSHGLT00000020760 ⟹ ENSHGLP00000020558

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624795	4,583,586 - 4,588,222 (-)	Ensembl

RefSeq Acc Id:

XM_004859578 ⟹ XP_004859635

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624795	4,583,569 - 4,588,185 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_004859635	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000020558

RefSeq Acc Id:

XP_004859635 ⟸ XM_004859578

Ensembl Acc Id:

ENSHGLP00000020558 ⟸ ENSHGLT00000020760

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000014696	Ensembl, ENTREZGENE
Ensembl Transcript	ENSHGLT00000020760	ENTREZGENE
NCBI Gene	Prr15l	ENTREZGENE
UniProt	A0AAX6PTL2_HETGA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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