Ifitm10 (interferon induced transmembrane protein 10) - Rat Genome Database

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Gene: Ifitm10 (interferon induced transmembrane protein 10) Heterocephalus glaber
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Symbol: Ifitm10
Name: interferon induced transmembrane protein 10
RGD ID: 18911284
Description: ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: interferon-induced transmembrane protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476714,641,386 - 14,659,060 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ifitm10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476714,641,386 - 14,659,060 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
IFITM10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,732,406 - 1,750,595 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl111,732,406 - 1,750,595 (-)EnsemblGRCh38hg38GRCh38
GRCh37111,753,636 - 1,771,825 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera111,794,149 - 1,807,467 (-)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef111,544,658 - 1,562,714 (-)NCBIHuRef
CHM1_1111,752,571 - 1,770,775 (-)NCBICHM1_1
T2T-CHM13v2.0111,817,953 - 1,836,145 (-)NCBIT2T-CHM13v2.0
Ifitm10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397141,879,572 - 141,927,526 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7141,879,574 - 141,927,490 (-)EnsemblGRCm39 Ensembl
GRCm387142,325,835 - 142,373,779 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7142,325,837 - 142,373,753 (-)EnsemblGRCm38mm10GRCm38
MGSCv377149,512,015 - 149,558,164 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367142,135,500 - 142,181,649 (-)NCBIMGSCv36mm8
Celera7142,081,367 - 142,128,016 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map787.9NCBI
Ifitm10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81206,936,979 - 206,954,594 (-)NCBIGRCr8
mRatBN7.21197,507,501 - 197,524,180 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1197,507,503 - 197,525,151 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01215,521,604 - 215,538,283 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1215,515,764 - 215,536,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01222,417,076 - 222,434,483 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41202,599,703 - 202,617,230 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1195,126,512 - 195,143,906 (-)NCBICelera
Cytogenetic Map1q41NCBI
Ifitm10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542213,557,416 - 13,573,715 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542213,556,968 - 13,572,010 (-)NCBIChiLan1.0ChiLan1.0
IFITM10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v294,156,357 - 4,171,070 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,367,363 - 3,381,902 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0111,771,296 - 1,787,042 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1111,801,604 - 1,819,144 (-)NCBIpanpan1.1PanPan1.1panPan2
IFITM10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11845,998,672 - 46,008,494 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1845,999,103 - 46,006,202 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1844,608,941 - 44,618,802 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01846,680,085 - 46,689,944 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11846,127,673 - 46,137,536 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01845,708,054 - 45,717,912 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01846,453,585 - 46,463,449 (-)NCBIUU_Cfam_GSD_1.0
Ifitm10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049471,406,550 - 1,424,694 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936816660,396 - 677,658 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936816660,564 - 678,708 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFITM10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl21,166,971 - 1,183,315 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.121,166,975 - 1,183,309 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
IFITM10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111,552,785 - 1,570,099 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11,553,268 - 1,567,827 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603898,737,084 - 98,757,329 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021264397   ⟹   XP_021120056
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476714,641,386 - 14,659,060 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021120056 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021120056   ⟸   XM_021264397
- UniProtKB: A0AAX6TG03 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
NCBI Gene Ifitm10 ENTREZGENE
UniProt A0AAX6TG03 ENTREZGENE, UniProtKB/TrEMBL