LOC101713196 (multidrug resistance protein 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC101713196 (multidrug resistance protein 1) Heterocephalus glaber
Analyze
Symbol: LOC101713196
Name: multidrug resistance protein 1
RGD ID: 18910145
Description: ENCODES a protein that exhibits ABC-type oligopeptide transporter activity (inferred); ABC-type transporter activity (inferred); ATP binding (inferred); INVOLVED IN oligopeptide export from mitochondrion (inferred); transmembrane transport (inferred); FOUND IN membrane (inferred); mitochondrial inner membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248097,066,108 - 7,217,610 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004862427   ⟹   XP_004862484
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248097,066,108 - 7,217,606 (-)NCBI
RefSeq Acc Id: XM_013078708   ⟹   XP_012934162
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248097,066,108 - 7,217,610 (-)NCBI
RefSeq Acc Id: XM_021242611   ⟹   XP_021098270
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248097,068,787 - 7,217,602 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004862484 (Get FASTA)   NCBI Sequence Viewer  
  XP_012934162 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098270 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA97860 (Get FASTA)   NCBI Sequence Viewer  
  EHB07816 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021111
RefSeq Acc Id: XP_012934162   ⟸   XM_013078708
- Peptide Label: isoform X2
- UniProtKB: A0AAX6R764 (UniProtKB/TrEMBL),   G5ALF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004862484   ⟸   XM_004862427
- Peptide Label: isoform X1
- UniProtKB: A0AAX6PX96 (UniProtKB/TrEMBL),   G5ALF0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021098270   ⟸   XM_021242611
- Peptide Label: isoform X3
- UniProtKB: A0AAX6RQ99 (UniProtKB/TrEMBL),   G5ALF0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015082 ENTREZGENE
Ensembl Transcript ENSHGLT00000021314 ENTREZGENE
Gene3D-CATH ABC transporter type 1, transmembrane domain UniProtKB/TrEMBL
  P-loop containing nucleotide triphosphate hydrolases UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC1_TM_dom UniProtKB/TrEMBL
  ABC1_TM_sf UniProtKB/TrEMBL
  ABC_transporter-like_ATP-bd UniProtKB/TrEMBL
  ABC_transporter-like_CS UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Type_1_exporter UniProtKB/TrEMBL
NCBI Gene LOC101713196 ENTREZGENE
PANTHER ABC TRANSPORTER B FAMILY UniProtKB/TrEMBL
  MYCOBACTIN IMPORT ATP-BINDING/PERMEASE PROTEIN IRTB UniProtKB/TrEMBL
Pfam ABC_membrane UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TM1F UniProtKB/TrEMBL
  ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP ABC transporter transmembrane region UniProtKB/TrEMBL
  P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
UniProt A0AAX6PX96 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R764 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RQ99 ENTREZGENE, UniProtKB/TrEMBL
  G5ALF0 ENTREZGENE, UniProtKB/TrEMBL