Lce6a (late cornified envelope 6A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Lce6a (late cornified envelope 6A) Heterocephalus glaber
Analyze
Symbol: Lce6a
Name: late cornified envelope 6A
RGD ID: 18904508
Description: ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: late cornified envelope protein 6A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624885333,046 - 333,357 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Lce6a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624885333,046 - 333,357 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
LCE6A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381152,842,856 - 152,843,983 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1152,842,856 - 152,843,983 (+)EnsemblGRCh38hg38GRCh38
GRCh371152,815,332 - 152,816,459 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,082,621 - 151,083,082 (+)NCBINCBI36Build 36hg18NCBI36
Celera1125,885,590 - 125,886,719 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,178,318 - 124,179,447 (+)NCBIHuRef
CHM1_11154,210,693 - 154,211,822 (+)NCBICHM1_1
T2T-CHM13v2.01151,979,388 - 151,980,541 (+)NCBIT2T-CHM13v2.0
Lce6a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39392,512,128 - 92,528,975 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl392,527,388 - 92,528,967 (-)EnsemblGRCm39 Ensembl
GRCm38392,604,821 - 92,621,660 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl392,620,081 - 92,621,660 (-)EnsemblGRCm38mm10GRCm38
MGSCv37392,424,007 - 92,425,582 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera394,461,933 - 94,463,508 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map340.14NCBI
Lce6a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82180,889,761 - 180,890,847 (-)NCBIGRCr8
mRatBN7.22178,194,148 - 178,195,234 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2178,194,318 - 178,194,563 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2185,749,716 - 185,750,802 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02183,730,391 - 183,731,477 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02178,392,813 - 178,393,899 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02192,811,593 - 192,813,142 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2192,811,766 - 192,812,008 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02212,058,270 - 212,058,685 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42185,603,359 - 185,603,774 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2172,062,797 - 172,064,346 (+)NCBICelera
Cytogenetic Map2q34NCBI
LCE6A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2197,000,349 - 97,001,612 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,751,596 - 96,752,769 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,187,490 - 128,188,665 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11131,818,031 - 131,819,157 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1131,818,696 - 131,818,938 (+)Ensemblpanpan1.1panPan2
LCE6A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11761,653,363 - 61,654,514 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1761,121,196 - 61,122,349 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01762,801,489 - 62,802,641 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11761,530,222 - 61,531,374 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01761,599,902 - 61,601,054 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01762,356,395 - 62,357,547 (+)NCBIUU_Cfam_GSD_1.0
Lce6a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505823,809,039 - 23,810,785 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365802,840,642 - 2,841,167 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LCE6A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,878,229 - 10,879,885 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,878,566 - 10,878,805 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603810,355,219 - 10,356,348 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004921206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01099067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004921206   ⟹   XP_004921263
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624885333,046 - 333,357 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004921263 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004921263   ⟸   XM_004921206
- UniProtKB: A0AAX6QI60 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
InterPro LCE6A UniProtKB/TrEMBL
NCBI Gene Lce6a ENTREZGENE
Pfam LCE6A UniProtKB/TrEMBL
UniProt A0AAX6QI60 ENTREZGENE, UniProtKB/TrEMBL