LOC101703754 (protocadherin alpha-C2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC101703754 (protocadherin alpha-C2) Heterocephalus glaber
Analyze
Symbol: LOC101703754 (Ensembl: PCDHAC2)
Name: protocadherin alpha-C2
RGD ID: 18903010
Description: ENCODES a protein that exhibits calcium ion binding (inferred); INVOLVED IN cell adhesion (inferred); homophilic cell adhesion via plasma membrane adhesion molecules (inferred); serotonergic neuron axon guidance (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Pcdha13; Pcdhac2; protocadherin alpha 13; protocadherin alpha subfamily C, 2; protocadherin alpha-9
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624774263,296 - 305,009 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624774124,408 - 304,131 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004854277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021266113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01052510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01052527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01006719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000008172   ⟹   ENSHGLP00000008084
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624774263,296 - 305,009 (+)Ensembl
RefSeq Acc Id: XM_004854277   ⟹   XP_004854334
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624774262,668 - 304,131 (+)NCBI
RefSeq Acc Id: XM_021266112   ⟹   XP_021121771
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624774262,663 - 304,131 (+)NCBI
RefSeq Acc Id: XM_021266113   ⟹   XP_021121772
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624774124,408 - 304,131 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004854334 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121771 (Get FASTA)   NCBI Sequence Viewer  
  XP_021121772 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008084
  ENSHGLP00100034236
GenBank Protein JAN96913 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021121772   ⟸   XM_021266113
- Peptide Label: isoform X3
- UniProtKB: A0AAX6THA2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021121771   ⟸   XM_021266112
- Peptide Label: isoform X2
- UniProtKB: A0AAX6TIV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004854334   ⟸   XM_004854277
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J154 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000008084   ⟸   ENSHGLT00000008172


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005853 Ensembl, ENTREZGENE
  ENSHGLG00100000378 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000008172 ENTREZGENE
  ENSHGLT00100063222 UniProtKB/TrEMBL
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
  Cadherin_CBD UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_N UniProtKB/TrEMBL
  Protocadherin/Cadherin-CA UniProtKB/TrEMBL
KEGG Report hgl:101703754 UniProtKB/TrEMBL
NCBI Gene LOC101703754 ENTREZGENE
PANTHER CADHERIN-87A UniProtKB/TrEMBL
  PTHR24028:SF119 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_2 UniProtKB/TrEMBL
  Cadherin_C_2 UniProtKB/TrEMBL
  Cadherin_tail UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A0P6J154 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6THA2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6TIV7 ENTREZGENE, UniProtKB/TrEMBL