Trpc5os (TRPC5 opposite strand) - Rat Genome Database

Name: Trpc5os
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Trpc5os (TRPC5 opposite strand) Heterocephalus glaber

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Symbol:

Trpc5os

Name:

TRPC5 opposite strand

RGD ID:

18901728

Description:

ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); factor VIII deficiency (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

putative uncharacterized protein TRPC5OS

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624803	3,709,108 - 3,709,538 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624869	1,224,955 - 1,225,290 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

autosomal hemophilia A (ISO)

factor VIII deficiency (ISO)

schizophrenia (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

References

Genomics

Comparative Map Data

Trpc5os
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624803	3,709,108 - 3,709,538 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624869	1,224,955 - 1,225,290 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

TRPC5OS
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	111,876,051 - 111,903,990 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	111,876,051 - 111,903,990 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	111,119,279 - 111,147,218 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	X	q23	NCBI
HuRef	X	100,740,407 - 100,768,149 (+)	ENTREZGENE		HuRef
CHM1_1	X	111,030,502 - 111,058,442 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	110,324,392 - 110,352,330 (+)	NCBI		T2T-CHM13v2.0

Trpc5os
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	143,238,872 - 143,260,059 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	143,239,577 - 143,260,062 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	144,455,876 - 144,477,063 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	144,456,581 - 144,477,066 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	140,891,125 - 140,911,606 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Celera	X	128,412,864 - 128,432,833 (+)	NCBI		Celera
Cytogenetic Map	X	F2	NCBI
cM Map	X	65.58	NCBI

Trpc5os
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	112,821,831 - 112,843,240 (+)	NCBI		GRCr8
mRatBN7.2	X	108,025,172 - 108,044,201 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	108,024,924 - 108,046,581 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	X	115,702,979 - 115,725,017 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	115,721,251 - 115,721,583 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	114,155,144 - 114,176,434 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	X	107,412,344 - 107,434,461 (+)	NCBI		Celera
Cytogenetic Map	X	q34	NCBI

Trpc5os
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955490	3,952,565 - 3,981,690 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRPC5OS
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	111,362,717 - 111,392,005 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	111,366,321 - 111,395,613 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	100,994,450 - 101,017,068 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	111,447,152 - 111,475,051 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

TRPC5OS
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	84,932,849 - 84,942,368 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	84,940,368 - 84,940,700 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	71,031,942 - 71,041,538 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	86,617,914 - 86,627,417 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	86,625,425 - 86,625,757 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	84,075,787 - 84,085,371 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	85,753,655 - 85,763,160 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	85,602,245 - 85,613,614 (+)	NCBI		UU_Cfam_GSD_1.0

Trpc5os
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	84,186,884 - 84,214,940 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936499	3,443,515 - 3,443,966 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRPC5OS
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	X	91,821,128 - 91,823,780 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	106,235,932 - 106,236,261 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRPC5OS
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	99,651,846 - 99,683,052 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666065	24,952,874 - 24,978,086 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013067591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AHKG01095319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSHGLT00000001652 ⟹ ENSHGLP00000001608

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla_female_1.0 Ensembl	NW_004624803	3,709,108 - 3,709,538 (-)	Ensembl

RefSeq Acc Id:

XM_013067591 ⟹ XP_012923045

Type:

CODING

Position:

Naked Mole-Rat Assembly	Chr	Position (strand)	Source
HetGla 1.0	NW_004624869	1,224,955 - 1,225,290 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_012923045	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSHGLP00000029932
	ENSHGLP00000051786
	ENSHGLP00100040811
	ENSHGLP00100061112

RefSeq Acc Id:

XP_012923045 ⟸ XM_013067591

Ensembl Acc Id:

ENSHGLP00000001608 ⟸ ENSHGLT00000001652

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSHGLG00000001225	Ensembl
	ENSHGLG00000049837	UniProtKB/TrEMBL
	ENSHGLG00100033649	UniProtKB/TrEMBL
Ensembl Transcript	ENSHGLT00000061620	UniProtKB/TrEMBL
	ENSHGLT00000070087	UniProtKB/TrEMBL
	ENSHGLT00100048201	UniProtKB/TrEMBL
	ENSHGLT00100058783	UniProtKB/TrEMBL
NCBI Gene	Trpc5os	ENTREZGENE
UniProt	A0A0P6IWQ4_HETGA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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