LOC101699770 (guanylate-binding protein 1) - Rat Genome Database

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Gene: LOC101699770 (guanylate-binding protein 1) Heterocephalus glaber
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Symbol: LOC101699770 (Ensembl: GBP1)
Name: guanylate-binding protein 1
RGD ID: 18899803
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); INVOLVED IN cellular response to type II interferon (inferred); innate immune response (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Gbp1; guanylate binding protein 1, interferon-inducible; interferon-induced guanylate-binding protein 1
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247428,543,688 - 8,594,728 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247428,543,804 - 8,564,944 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000012016   ⟹   ENSHGLP00000011886
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247428,543,688 - 8,594,728 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000012017   ⟹   ENSHGLP00000011887
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247428,543,688 - 8,594,728 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000012018   ⟹   ENSHGLP00000011888
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247428,543,688 - 8,566,424 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000012019   ⟹   ENSHGLP00000011889
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247428,545,292 - 8,594,728 (+)Ensembl
RefSeq Acc Id: XM_004841315   ⟹   XP_004841372
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247428,543,804 - 8,564,944 (+)NCBI
RefSeq Acc Id: XM_021255417   ⟹   XP_021111076
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247428,545,250 - 8,564,944 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004841372 (Get FASTA)   NCBI Sequence Viewer  
  XP_021111076 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011888
RefSeq Acc Id: XP_004841372   ⟸   XM_004841315
- UniProtKB: G5BGF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021111076   ⟸   XM_021255417
- UniProtKB: G5BGF6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000011886   ⟸   ENSHGLT00000012016
Ensembl Acc Id: ENSHGLP00000011887   ⟸   ENSHGLT00000012017
Ensembl Acc Id: ENSHGLP00000011888   ⟸   ENSHGLT00000012018
Ensembl Acc Id: ENSHGLP00000011889   ⟸   ENSHGLT00000012019


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008509 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012018 ENTREZGENE
Gene3D-CATH Guanylate-binding protein, C-terminal domain UniProtKB/TrEMBL
  P-loop containing nucleotide triphosphate hydrolases UniProtKB/TrEMBL
InterPro G_GB1_RHD3_dom UniProtKB/TrEMBL
  GBP_C UniProtKB/TrEMBL
  Guanylate-bd/ATL_C UniProtKB/TrEMBL
  Guanylate-bd_C_sf UniProtKB/TrEMBL
  Guanylate-bd_N UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene LOC101699770 ENTREZGENE
PANTHER GUANYLATE BINDING PROTEIN UniProtKB/TrEMBL
  GUANYLATE-BINDING PROTEIN 3 UniProtKB/TrEMBL
Pfam GBP UniProtKB/TrEMBL
  GBP_C UniProtKB/TrEMBL
PROSITE G_GB1_RHD3 UniProtKB/TrEMBL
Superfamily-SCOP Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain UniProtKB/TrEMBL
  P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
UniProt G5BGF6 ENTREZGENE, UniProtKB/TrEMBL