LRRN4CL (LRRN4 C-terminal like) - Rat Genome Database

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Gene: LRRN4CL (LRRN4 C-terminal like) Chlorocebus sabaeus
Analyze
Symbol: LRRN4CL
Name: LRRN4 C-terminal like
RGD ID: 18697993
Description: ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Larsen-like syndrome B3GAT3 type (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LRRN4 C-terminal-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,216,797 - 11,219,438 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,218,434 - 11,219,150 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,555,129 - 108,558,523 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LRRN4CL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,216,797 - 11,219,438 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,218,434 - 11,219,150 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,555,129 - 108,558,523 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LRRN4CL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,686,406 - 62,689,530 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,686,406 - 62,689,530 (-)EnsemblGRCh38hg38GRCh38
GRCh371162,453,878 - 62,457,002 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361162,210,450 - 62,213,776 (-)NCBINCBI36Build 36hg18NCBI36
Celera1159,755,691 - 59,785,570 (-)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,782,666 - 58,786,152 (-)NCBIHuRef
CHM1_11162,336,985 - 62,340,482 (-)NCBICHM1_1
T2T-CHM13v2.01162,675,825 - 62,678,949 (-)NCBIT2T-CHM13v2.0
Lrrn4cl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,828,132 - 8,831,273 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,828,132 - 8,831,273 (+)EnsemblGRCm39 Ensembl
GRCm38198,850,768 - 8,853,909 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,850,768 - 8,853,909 (+)EnsemblGRCm38mm10GRCm38
MGSCv37198,925,275 - 8,928,399 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36198,917,830 - 8,921,631 (+)NCBIMGSCv36mm8
Celera198,610,596 - 8,613,720 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.81NCBI
Lrrn4cl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,172,689 - 215,192,627 (+)NCBIGRCr8
mRatBN7.21205,743,580 - 205,759,879 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1214,153,886 - 214,156,799 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,188,727 - 221,191,641 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01213,881,577 - 213,884,491 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01225,046,248 - 225,050,963 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,048,149 - 225,051,696 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,983,852 - 232,000,149 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,520,875 - 211,523,789 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1203,258,117 - 203,261,031 (+)NCBICelera
Cytogenetic Map1q43NCBI
Lrrn4cl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955599504,370 - 517,989 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955599514,328 - 516,684 (+)NCBIChiLan1.0ChiLan1.0
LRRN4CL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2963,912,679 - 63,916,399 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11164,952,079 - 64,959,110 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01158,042,970 - 58,046,697 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,396,743 - 61,398,946 (-)NCBIpanpan1.1PanPan1.1panPan2
LRRN4CL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,971,590 - 53,973,958 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,972,490 - 53,973,203 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1852,576,925 - 52,579,313 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01855,023,776 - 55,026,166 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1855,024,694 - 55,025,407 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11854,120,021 - 54,122,410 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01853,694,485 - 53,696,878 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01854,490,795 - 54,493,187 (+)NCBIUU_Cfam_GSD_1.0
Lrrn4cl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,463,652 - 10,466,633 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936581578,029 - 580,332 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936581577,372 - 580,426 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRN4CL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.129,065,340 - 9,067,639 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,410,736 - 8,413,383 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Lrrn4cl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249261,187,267 - 1,197,120 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249261,187,387 - 1,189,533 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 35 10 43
Below cutoff 1 6 16

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007995358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000019266   ⟹   ENSCSAP00000018686
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl111,218,434 - 11,219,150 (+)Ensembl
RefSeq Acc Id: XM_007995358   ⟹   XP_007993549
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1111,216,797 - 11,219,438 (+)NCBI
Vero_WHO_p1.0NW_023666038108,555,129 - 108,558,523 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007993549 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018686.1
RefSeq Acc Id: XP_007993549   ⟸   XM_007995358
- UniProtKB: A0A0D9SCU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018686   ⟸   ENSCSAT00000019266


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019176 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019266.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
KEGG Report csab:103233950 UniProtKB/TrEMBL
NCBI Gene LRRN4CL ENTREZGENE
PROSITE FN3 UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
UniProt A0A0D9SCU7 ENTREZGENE, UniProtKB/TrEMBL