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Gene: LRRN4CL (LRRN4 C-terminal like) Chlorocebus sabaeus

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Symbol:

LRRN4CL

Name:

LRRN4 C-terminal like

RGD ID:

18697993

Description:

ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); intellectual disability (ortholog); Larsen-like syndrome B3GAT3 type (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LRRN4 C-terminal-like protein

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LRRN4CL (LRRN4 C-terminal like)	NCBI	Ortholog
Mus musculus (house mouse):	Lrrn4cl (LRRN4 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Lrrn4cl (LRRN4 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lrrn4cl (LRRN4 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LRRN4CL (LRRN4 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LRRN4CL (LRRN4 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lrrn4cl (LRRN4 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LRRN4CL (LRRN4 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lrrn4cl (LRRN4 C-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	11,216,797 - 11,219,438 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	11,218,434 - 11,219,150 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	108,555,129 - 108,558,523 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease type 2 (ISO)

intellectual disability (ISO)

Larsen-like syndrome B3GAT3 type (ISO)

leukocyte adhesion deficiency 3 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LRRN4CL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	11,216,797 - 11,219,438 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	11,218,434 - 11,219,150 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	108,555,129 - 108,558,523 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LRRN4CL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	62,686,406 - 62,689,530 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	62,686,406 - 62,689,530 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	62,453,878 - 62,457,002 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	62,210,450 - 62,213,776 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	59,755,691 - 59,785,570 (-)	NCBI		Celera
Cytogenetic Map	11	q12.3	NCBI
HuRef	11	58,782,666 - 58,786,152 (-)	NCBI		HuRef
CHM1_1	11	62,336,985 - 62,340,482 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	62,675,825 - 62,678,949 (-)	NCBI		T2T-CHM13v2.0

Lrrn4cl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	8,828,132 - 8,831,273 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	8,828,132 - 8,831,273 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	8,850,768 - 8,853,909 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	8,850,768 - 8,853,909 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	8,925,275 - 8,928,399 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	8,917,830 - 8,921,631 (+)	NCBI		MGSCv36	mm8
Celera	19	8,610,596 - 8,613,720 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	5.81	NCBI

Lrrn4cl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	215,172,689 - 215,192,627 (+)	NCBI		GRCr8
mRatBN7.2	1	205,743,580 - 205,759,879 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	1	214,153,886 - 214,156,799 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	221,188,727 - 221,191,641 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	213,881,577 - 213,884,491 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	225,046,248 - 225,050,963 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	225,048,149 - 225,051,696 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	231,983,852 - 232,000,149 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	211,520,875 - 211,523,789 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	203,258,117 - 203,261,031 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

Lrrn4cl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955599	504,370 - 517,989 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955599	514,328 - 516,684 (+)	NCBI	ChiLan1.0	ChiLan1.0

LRRN4CL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	63,912,679 - 63,916,399 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	64,952,079 - 64,959,110 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	58,042,970 - 58,046,697 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	61,396,743 - 61,398,946 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

LRRN4CL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	53,971,590 - 53,973,958 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	53,972,490 - 53,973,203 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	52,576,925 - 52,579,313 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	55,023,776 - 55,026,166 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	55,024,694 - 55,025,407 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	54,120,021 - 54,122,410 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	53,694,485 - 53,696,878 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	54,490,795 - 54,493,187 (+)	NCBI		UU_Cfam_GSD_1.0

Lrrn4cl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	10,463,652 - 10,466,633 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936581	578,029 - 580,332 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936581	577,372 - 580,426 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRN4CL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	9,065,340 - 9,067,639 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	8,410,736 - 8,413,383 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Lrrn4cl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624926	1,187,267 - 1,197,120 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624926	1,187,387 - 1,189,533 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LRRN4CL
48 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
75	36	16	32	32	59	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007995358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000019266 ⟹ ENSCSAP00000018686

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	1	11,218,434 - 11,219,150 (+)	Ensembl

RefSeq Acc Id:

XM_007995358 ⟹ XP_007993549

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	11,216,797 - 11,219,438 (+)	NCBI
Vero_WHO_p1.0	NW_023666038	108,555,129 - 108,558,523 (+)	NCBI

Sequence:

show sequence

TTCTTGTCAAGGGCTGCTCATGGGGAAGGCCTCCAGACCCAGGCTATTTTAAGCACAGATGTTT
CCATTCATAAGCCTAGGAAGTCCAAGGAGGGAGAAGCTATCCTGGCCCCTAGCAAGCTTCCTAC
TCCCTGCATGTGACTTTCATCTCCCCCAGGGGAGGGGGCTGGGGTAGGGCAGGTCTGGAGAGCT
GGGAGACATCATTCTGGCCCCCTCTATACCCCTCCCTTCCTCCCTTTCTCTGTCCATTGGGAGG
CAGAAGACAGGAAATGACTGCCATGGATGTGGTATGATTTTTACCAAAACAGCATTTTGCAGCT
CAGGCCCGTGCTGTTTGCAGCTGTTTTCCTCTAATACTAGCCAGGTGGCCGCCTCCTATGTTCC
CCTCCCCATCCCTTCGTATGACTTCAGCCTTCAGATTCTAAGCGCCTGGCTGCTTTCCACATTC
CATTCCCCTCCAGAACCCAGGCATCCTGGGCTCCAGCTGAAACCATTGCATGTGGTTTTCCCGA
TCCCTGGCCCCGTGACTCAGTCCCTCTGAAGGGAGCAGCCCTCTTTTTTGGCAATCACCGGGGA
GGTGGGGGGAGGAGGAGGGGAGCTAGGTGGTGACATCACAGTCAAAGGTTATAAAAGCTTCCAG
CCAAACAGCATTGAAGTTGAAGATAGAACCTGACAGCACAGCCTGAGATCTTGGGGATCAGCTT
AACACCCACAGACATCGGCTGGTGGATTCCCGCTGCATCAAGGCCTACCCACTGTCTCCATGCT
GGGCTCTCCCTGCCTTCTGTGGCTCCTGGCCGTGACCTTCTTGGTTCCCAGAGCTCAGCCCTTG
GCCCCTCAAGACTTTGAAGAAGAGGAAGAAGATGAGACTGAGACGGCGTGGCCGCCTTTGCCGG
CTGTCCCCTGCGACTACGACCACTGCCGACACCTGCAGGTGCCCTGTAAGGAGCTACAGAGGGC
CGGGCCGGCGGCCTGCCTGTGCCCAGGACTCTCCAGCCCTGCCCAGCCGCCCGACCCGCCGCGC
ATGGGAGAAGTGAGCATTGTGGCCGAAGAGGGCCGCGCAGTGGTCCACTGGTGTGCCCCCTTCT
CCCCGGTCCTCCACTACTGGCTGCTGCTTTGGGACGGCAGCGAGGCTGCGCAGAAGGGGCCCCC
GCTGAACGCTACGGTCCGCAGAGCCGAACTGAAGGGGCTGAAGCCAGGGGGCGTTTATGTCGTT
TGCGTGGTGGCCGCTAACGAGGCCGGGGCAAGCCGCGTGCCTGAGGCTGGAAGAGAGGGCCTCG
AGGGGGCCGACATCCCTGCCTTCGGGCCTTGCAGCCGCTTTGCGGTGCCGCCCAACCCCCGCAC
TCTGGTCCACGCTGCCGTCGGGGTGGGCACGGCCCTGGCCCTGCTGAGCTGTGCCGCCCTGGTG
TGGCACTTCTGCCTACGCGATCGCTGGGGCTGCCCGCGCCGAGCCGTCGCCCGAGCAGCAGGGG
CGCTCTGAAAGGGGCCTGGGGGCATCTCGGGCACAGCCAGCCCCACCTGGGGCGCTCAGCCCGG
CCCCTGGAAAGAGGGGAACCCGCTGCCTCCAGGGAGGGCTGGACGGCAAGCTGGGAGCCAGCCC
CAGGCTCTAGAGCCACAGCAGAGTCATGGTTCTCTGGGCTGAGCGCTTGTTTAGGTCCGGGACT
TGGCGTTTTGTTTCCTGGCTGAGGTCTGGGAAAGAATAGAAAGGGGCCCCCATTTTTTTTTTTT
TTTTAACGGTCAGATAGTAAATAATGTAACCTTTGCGGTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_007993549	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000018686.1

RefSeq Acc Id:	XP_007993549 ⟸ XM_007995358
- UniProtKB:	A0A0D9SCU7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000018686 ⟸ ENSCSAT00000019266

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000019176	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000019266.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	FN3_dom	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
KEGG Report	csab:103233950	UniProtKB/TrEMBL
NCBI Gene	LRRN4CL	ENTREZGENE
Pfam	fn3	UniProtKB/TrEMBL
PROSITE	FN3	UniProtKB/TrEMBL
SMART	FN3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49265	UniProtKB/TrEMBL
UniProt	A0A0D9SCU7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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