LOC103224346 (pancreatic alpha-amylase) - Rat Genome Database

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Gene: LOC103224346 (pancreatic alpha-amylase) Chlorocebus sabaeus
Analyze
Symbol: LOC103224346
Name: pancreatic alpha-amylase
RGD ID: 18434348
Description: ENCODES a protein that exhibits alpha-amylase activity (inferred); amylase activity (inferred); cation binding (inferred); INVOLVED IN carbohydrate metabolic process (inferred); FOUND IN extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12029,803,767 - 29,862,713 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603828,293,240 - 28,318,456 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


RefSeq Acc Id: XM_007977786   ⟹   XP_007975977
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12029,803,767 - 29,862,713 (-)NCBI
Vero_WHO_p1.0NW_02366603828,293,240 - 28,318,456 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007977787   ⟹   XP_007975978
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12029,803,767 - 29,856,067 (-)NCBI
Vero_WHO_p1.0NW_02366603828,300,633 - 28,318,456 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007977788   ⟹   XP_007975979
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12029,803,767 - 29,849,152 (-)NCBI
Vero_WHO_p1.0NW_02366603828,306,898 - 28,318,456 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007975977 (Get FASTA)   NCBI Sequence Viewer  
  XP_007975978 (Get FASTA)   NCBI Sequence Viewer  
  XP_007975979 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016506.1
RefSeq Acc Id: XP_007975977   ⟸   XM_007977786
- UniProtKB: A0A0D9S6L7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007975978   ⟸   XM_007977787
- UniProtKB: A0A0D9S6L7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007975979   ⟸   XM_007977788
- UniProtKB: A0A0D9S6L7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001521 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017012.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1180 UniProtKB/TrEMBL
  Glycosidases UniProtKB/TrEMBL
InterPro A-amylase/branching_C UniProtKB/TrEMBL
  A-amylase_C UniProtKB/TrEMBL
  Alpha_amylase UniProtKB/TrEMBL
  Glyco_hydro_13_cat_dom UniProtKB/TrEMBL
  Glyco_hydro_b UniProtKB/TrEMBL
  Glycoside_hydrolase_SF UniProtKB/TrEMBL
NCBI Gene LOC103224346 ENTREZGENE
PANTHER ALPHA-AMYLASE UniProtKB/TrEMBL
  ALPHA-AMYLASE UniProtKB/TrEMBL
Pfam Alpha-amylase UniProtKB/TrEMBL
  Alpha-amylase_C UniProtKB/TrEMBL
PRINTS ALPHAAMYLASE UniProtKB/TrEMBL
SMART Aamy UniProtKB/TrEMBL
  Aamy_C UniProtKB/TrEMBL
Superfamily-SCOP Glycosyl hydrolase domain UniProtKB/TrEMBL
  SSF51445 UniProtKB/TrEMBL
UniProt A0A0D9S6L7 ENTREZGENE, UniProtKB/TrEMBL