U6 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: U6 (U6 spliceosomal RNA) Homo sapiens
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Symbol: U6
Name: U6 spliceosomal RNA
RGD ID: 16570300
Description: ENCODES a pseudogene that exhibits U4 snRNA binding (inferred); INVOLVED IN formation of quadruple SL/U4/U5/U6 snRNP (inferred); spliceosomal tri-snRNP complex assembly (inferred); FOUND IN U4/U6 x U5 tri-snRNP complex (inferred); U6 snRNP (inferred)
Type: pseudo (Ensembl: snRNA)
RefSeq Status: MODEL
Previously known as: AL358434.1
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381180,758,722 - 180,758,817 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1180,758,722 - 180,758,817 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1q25.3NCBI
T2T-CHM13v2.01180,113,842 - 180,113,937 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
U6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381180,758,722 - 180,758,817 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1180,758,722 - 180,758,817 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1q25.3NCBI
T2T-CHM13v2.01180,113,842 - 180,113,937 (+)NCBIT2T-CHM13v2.0
Gm25448
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391362,939,321 - 62,939,427 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1362,939,321 - 62,939,427 (+)EnsemblGRCm39 Ensembl
GRCm381362,791,507 - 62,791,613 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1362,791,507 - 62,791,613 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map13B3NCBI
LOC120102567
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8489,176,205 - 89,176,311 (+)NCBIGRCr8
mRatBN7.2487,846,044 - 87,846,150 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl487,846,044 - 87,846,150 (+)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map4q24NCBI
LOC119873169
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha821,471,888 - 21,471,993 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0821,816,330 - 21,816,435 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl821,816,330 - 21,816,435 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1821,480,140 - 21,480,245 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0821,545,623 - 21,545,728 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0821,882,610 - 21,882,715 (-)NCBIUU_Cfam_GSD_1.0


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
9 32 39 47 99 33 34 7 27 4 25 111 102 88 15 51 23 3

Sequence

Nucleotide Sequences
GenBank Nucleotide AL358434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000636407
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1180,758,722 - 180,758,817 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC U6 COSMIC
Ensembl Genes ENSG00000283575 Ensembl, ENTREZGENE
GTEx ENSG00000283575 GTEx
Human Proteome Map U6 Human Proteome Map
NCBI Gene LOC124904687 ENTREZGENE
RNAcentral URS000067D376 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 U6  U6 spliceosomal RNA  AL358434.1    Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AL358434.1    U6  U6 spliceosomal RNA  Symbol and/or name change 19259462 PROVISIONAL