AC011899.2 (novel transcript, antisense to PTPRN2) - Rat Genome Database

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Gene: AC011899.2 (novel transcript, antisense to PTPRN2) Homo sapiens
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Symbol: AC011899.2
Name: novel transcript, antisense to PTPRN2
RGD ID: 16566575
Description:
Type: lncrna
Previously known as: AC011899.3
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl7157,868,538 - 157,869,154 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:269
Count of miRNA genes:253
Interacting mature miRNAs:269
Transcripts:ENST00000608596
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
913 1584 1049 977 2202 1046 1491 1 430 1317 327 799 3985 3852 6 2119 504 1036 977 104

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENST00000608596
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7157,868,538 - 157,869,154 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC011899.2 COSMIC
Ensembl Genes ENSG00000272839 Ensembl
GTEx ENSG00000272839 GTEx
Human Proteome Map AC011899.2 Human Proteome Map
RNAcentral URS00006073EC RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AC011899.2  novel transcript, antisense to PTPRN2  AC011899.3  novel transcript, antisense to PTPRN2  Symbol and/or name change 19259462 PROVISIONAL