AC005330.1 (novel transcript) - Rat Genome Database

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Gene: AC005330.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC005330.1
Name: novel transcript
RGD ID: 16564601
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl191,321,225 - 1,322,846 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:84
Count of miRNA genes:56
Interacting mature miRNAs:56
Transcripts:ENST00000590086
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1094 2133 2014 1511 4734 1359 1636 2 490 757 366 2088 4586 4344 9 3646 636 1550 1032 133

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENST00000590086
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl191,321,225 - 1,322,846 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC005330.1 COSMIC
Ensembl Genes ENSG00000267372 Ensembl
GTEx ENSG00000267372 GTEx
Human Proteome Map AC005330.1 Human Proteome Map