AC087516.2 (novel transcript) - Rat Genome Database

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Gene: AC087516.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC087516.2
Name: novel transcript
RGD ID: 16562384
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1536,438,972 - 36,471,016 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:166
Interacting mature miRNAs:170
Transcripts:ENST00000558262, ENST00000558875, ENST00000558963
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
234 805 811 425 1617 127 372 24 144 13 1090 1552 1194 1 747 374 910 117 11

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENST00000558262
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,441,618 - 36,460,449 (-)Ensembl
Ensembl Acc Id: ENST00000558875
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,443,537 - 36,471,016 (-)Ensembl
Ensembl Acc Id: ENST00000558963
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,438,972 - 36,444,512 (-)Ensembl
Ensembl Acc Id: ENST00000666078
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1536,439,913 - 36,447,500 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC087516.2 COSMIC
Ensembl Genes ENSG00000259737 Ensembl
GTEx ENSG00000259737 GTEx
Human Proteome Map AC087516.2 Human Proteome Map
RNAcentral URS00004A1BC9 RNACentral
  URS00004AD26B RNACentral
  URS00005D53E0 RNACentral
  URS0000EEFA73 RNACentral