AC005845.1 (novel transcript) - Rat Genome Database

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Gene: AC005845.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC005845.1
Name: novel transcript
RGD ID: 16560876
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl126,155,035 - 6,160,719 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:158
Count of miRNA genes:153
Interacting mature miRNAs:157
Transcripts:ENST00000539206
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1047 1564 1842 1766 3698 1246 1724 4 331 694 225 1478 4465 4342 35 3082 567 1214 1339 116

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENST00000539206
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,155,035 - 6,160,719 (-)Ensembl
Ensembl Acc Id: ENST00000810805
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,149,752 - 6,200,644 (-)Ensembl
Ensembl Acc Id: ENST00000810806
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,149,752 - 6,179,425 (-)Ensembl
Ensembl Acc Id: ENST00000810807
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,149,752 - 6,160,721 (-)Ensembl
Ensembl Acc Id: ENST00000810808
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl126,149,752 - 6,155,313 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC005845.1 COSMIC
Ensembl Genes ENSG00000255775 Ensembl
GTEx ENSG00000255775 GTEx
Human Proteome Map AC005845.1 Human Proteome Map
RNAcentral URS00005CBC0F RNACentral