AL606534.4 (novel pseudogene) - Rat Genome Database

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Gene: AL606534.4 (novel pseudogene) Homo sapiens
Analyze
Symbol: AL606534.4
Name: novel pseudogene
RGD ID: 16559693
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1243,054,861 - 243,056,394 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:394
Count of miRNA genes:358
Interacting mature miRNAs:385
Transcripts:ENST00000517560
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5 3 4 4 92 4 4 4 3 5 398 9 4
Low 709 582 946 335 1016 297 1849 305 741 275 519 827 50 735 847 4
Below cutoff 1518 2018 713 256 714 147 2024 1456 2565 119 450 714 109 439 1495

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000517560
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1243,054,861 - 243,056,394 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL606534.4 COSMIC
Ensembl Genes ENSG00000253326 Ensembl
GTEx ENSG00000253326 GTEx
Human Proteome Map AL606534.4 Human Proteome Map