LINC02971 (long intergenic non-protein coding RNA 2971) - Rat Genome Database

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Gene: LINC02971 (long intergenic non-protein coding RNA 2971) Homo sapiens
Analyze
Symbol: LINC02971 (Ensembl: AL391832.1)
Name: long intergenic non-protein coding RNA 2971 (Ensembl:novel transcript)
RGD ID: 16556873
Description:
Type: lncrna
Previously known as: AL391832.1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1234,957,231 - 234,959,989 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:247
Count of miRNA genes:228
Interacting mature miRNAs:241
Transcripts:ENST00000423963
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38.p14 Ensembl)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407095168GWAS744144_Hcognitive function measurement QTL GWAS744144 (human)0.0000007cognitive function measurement1234959697234959698Human
407249804GWAS898780_Hplatelet count QTL GWAS898780 (human)2e-08platelet quantity (VT:0003179)platelet count (CMO:0000029)1234958896234958897Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
158 372 181 150 257 357 599 308 1151 281 257 1909 1511 12 105 147 226 294 29

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENST00000423963
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1234,953,871 - 234,959,989 (+)Ensembl
Ensembl Acc Id: ENST00000702311
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1234,959,297 - 234,960,033 (+)Ensembl
Ensembl Acc Id: ENST00000850464
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1234,953,871 - 234,959,989 (+)Ensembl
Ensembl Acc Id: ENST00000850465
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1234,955,137 - 234,959,989 (+)Ensembl
Ensembl Acc Id: ENST00000850466
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1234,957,441 - 234,960,590 (+)Ensembl
Ensembl Acc Id: ENST00000850467
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1234,957,195 - 234,959,975 (+)Ensembl
Ensembl Acc Id: ENST00000850468
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1234,958,869 - 234,959,989 (+)Ensembl
Ensembl Acc Id: ENST00000850469
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1234,959,162 - 234,959,989 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC LINC02971 COSMIC
Ensembl Genes ENSG00000237520 Ensembl
GTEx ENSG00000237520 GTEx
Human Proteome Map LINC02971 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-12-06 LINC02971  long intergenic non-protein coding RNA 2971  AL391832.1  novel transcript  Symbol and/or name change 19259463 PROVISIONAL