AC006059.1 (novel transcript) - Rat Genome Database

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Gene: AC006059.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC006059.1
Name: novel transcript
RGD ID: 16554617
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl342,601,963 - 42,654,388 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:409
Count of miRNA genes:313
Interacting mature miRNAs:336
Transcripts:ENST00000434363, ENST00000438017, ENST00000445452
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1203 2412 2788 2250 4963 1627 2244 4 528 1852 369 2264 7075 6367 52 3730 1 840 1724 1607 174 1

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENST00000434363
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,632,427 - 42,654,394 (-)Ensembl
Ensembl Acc Id: ENST00000438017
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,601,961 - 42,654,392 (-)Ensembl
Ensembl Acc Id: ENST00000445452
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,612,290 - 42,654,388 (-)Ensembl
Ensembl Acc Id: ENST00000653434
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,621,446 - 42,654,051 (-)Ensembl
Ensembl Acc Id: ENST00000668806
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,623,385 - 42,654,156 (-)Ensembl
Ensembl Acc Id: ENST00000702423
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,601,961 - 42,654,389 (-)Ensembl
Ensembl Acc Id: ENST00000765507
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,601,961 - 42,654,389 (-)Ensembl
Ensembl Acc Id: ENST00000765508
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,601,961 - 42,654,389 (-)Ensembl
Ensembl Acc Id: ENST00000765509
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,601,961 - 42,654,389 (-)Ensembl
Ensembl Acc Id: ENST00000765510
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,602,668 - 42,654,387 (-)Ensembl
Ensembl Acc Id: ENST00000765511
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,632,424 - 42,654,396 (-)Ensembl
Ensembl Acc Id: ENST00000765512
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,632,428 - 42,654,392 (-)Ensembl
Ensembl Acc Id: ENST00000765513
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,632,565 - 42,654,389 (-)Ensembl
Ensembl Acc Id: ENST00000765514
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl342,647,644 - 42,654,388 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC006059.1 COSMIC
Ensembl Genes ENSG00000230084 Ensembl
GTEx ENSG00000230084 GTEx
Human Proteome Map AC006059.1 Human Proteome Map