AL121985.1 (novel transcript, antisense to CD48) - Rat Genome Database

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Gene: AL121985.1 (novel transcript, antisense to CD48) Homo sapiens
Analyze
Symbol: AL121985.1
Name: novel transcript, antisense to CD48
RGD ID: 16554254
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1160,670,778 - 160,699,761 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:564
Count of miRNA genes:426
Interacting mature miRNAs:451
Transcripts:ENST00000443928, ENST00000452210, ENST00000588034, ENST00000598917
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1102 2095 1853 1484 3328 1303 1988 4 439 1932 283 2028 5402 5340 52 2234 565 1388 1488 168

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENST00000443928
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1160,673,012 - 160,684,067 (+)Ensembl
Ensembl Acc Id: ENST00000588034
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1160,673,522 - 160,683,908 (+)Ensembl
Ensembl Acc Id: ENST00000598917
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1160,670,778 - 160,686,692 (+)Ensembl
Ensembl Acc Id: ENST00000621431
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1160,676,360 - 160,699,285 (+)Ensembl
Ensembl Acc Id: ENST00000626085
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1160,676,371 - 160,699,205 (+)Ensembl
Ensembl Acc Id: ENST00000627180
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1160,676,371 - 160,684,314 (+)Ensembl
Ensembl Acc Id: ENST00000627799
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1160,676,371 - 160,699,310 (+)Ensembl
Ensembl Acc Id: ENST00000627996
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1160,676,371 - 160,699,028 (+)Ensembl
Ensembl Acc Id: ENST00000628340
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1160,676,371 - 160,699,761 (+)Ensembl
Ensembl Acc Id: ENST00000630436
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1160,676,371 - 160,692,240 (+)Ensembl
Ensembl Acc Id: ENST00000840727
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1160,647,286 - 160,671,421 (+)Ensembl
Ensembl Acc Id: ENST00000840728
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1160,647,034 - 160,648,420 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL121985.1 COSMIC
Ensembl Genes ENSG00000228863 Ensembl
GTEx ENSG00000228863 GTEx
Human Proteome Map AL121985.1 Human Proteome Map
RNAcentral URS000006BC9B RNACentral
  URS000081185A RNACentral
  URS00008118E4 RNACentral
  URS0000811ADF RNACentral
  URS0000811B3F RNACentral
  URS0000811CD1 RNACentral
  URS0000811D49 RNACentral
  URS0000811DAE RNACentral
  URS0000812009 RNACentral
  URS000081204D RNACentral