AC117453.1 (novel transcript, antisense to KCNMB2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: AC117453.1 (novel transcript, antisense to KCNMB2) Homo sapiens
Analyze
Symbol: AC117453.1
Name: novel transcript, antisense to KCNMB2
RGD ID: 16552738
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl3178,164,008 - 178,385,479 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:699
Count of miRNA genes:391
Interacting mature miRNAs:423
Transcripts:ENST00000411727, ENST00000414475, ENST00000417383, ENST00000418585, ENST00000439810
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
653 1189 821 1867 2572 953 1373 1 141 466 83 429 3557 3927 23 2280 470 1203 1038 61 1

Sequence

Nucleotide Sequences

Ensembl Acc Id: ENST00000411727
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,333,539 - 178,385,396 (-)Ensembl
Ensembl Acc Id: ENST00000414475
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,202,050 - 178,385,309 (-)Ensembl
Ensembl Acc Id: ENST00000417383
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,335,025 - 178,385,357 (-)Ensembl
Ensembl Acc Id: ENST00000418585
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,332,202 - 178,385,376 (-)Ensembl
Ensembl Acc Id: ENST00000439810
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,198,556 - 178,385,417 (-)Ensembl
Ensembl Acc Id: ENST00000651749
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,164,015 - 178,385,280 (-)Ensembl
Ensembl Acc Id: ENST00000655507
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,164,008 - 178,196,763 (-)Ensembl
Ensembl Acc Id: ENST00000656199
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,277,004 - 178,385,279 (-)Ensembl
Ensembl Acc Id: ENST00000657443
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,381,305 - 178,385,479 (-)Ensembl
Ensembl Acc Id: ENST00000659038
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,292,421 - 178,385,264 (-)Ensembl
Ensembl Acc Id: ENST00000663946
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,275,012 - 178,385,348 (-)Ensembl
Ensembl Acc Id: ENST00000685251
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,198,543 - 178,385,322 (-)Ensembl
Ensembl Acc Id: ENST00000701503
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,198,543 - 178,385,322 (-)Ensembl
Ensembl Acc Id: ENST00000729382
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,179,599 - 178,195,477 (-)Ensembl
Ensembl Acc Id: ENST00000729383
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,194,260 - 178,198,009 (-)Ensembl
Ensembl Acc Id: ENST00000749224
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,198,543 - 178,385,350 (-)Ensembl
Ensembl Acc Id: ENST00000749225
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,198,543 - 178,385,322 (-)Ensembl
Ensembl Acc Id: ENST00000749226
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,198,556 - 178,385,296 (-)Ensembl
Ensembl Acc Id: ENST00000749227
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,198,543 - 178,206,774 (-)Ensembl
Ensembl Acc Id: ENST00000749228
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,198,539 - 178,206,705 (-)Ensembl
Ensembl Acc Id: ENST00000749229
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,198,543 - 178,206,670 (-)Ensembl
Ensembl Acc Id: ENST00000749230
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,198,543 - 178,206,626 (-)Ensembl
Ensembl Acc Id: ENST00000749231
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,201,271 - 178,206,716 (-)Ensembl
Ensembl Acc Id: ENST00000749232
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3178,198,543 - 178,201,090 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC117453.1 COSMIC
Ensembl Genes ENSG00000223930 Ensembl
GTEx ENSG00000223930 GTEx
Human Proteome Map AC117453.1 Human Proteome Map