U8 (U8 small nucleolar RNA) - Rat Genome Database

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Gene: U8 (U8 small nucleolar RNA) Homo sapiens
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Symbol: U8
Name: U8 small nucleolar RNA
RGD ID: 16551704
Description: INVOLVED IN RNA processing (inferred); FOUND IN nucleolus (inferred)
Type: snorna
RefSeq Status: MODEL
Previously known as: AC135983.1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381532,426,288 - 32,426,420 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1532,426,288 - 32,426,420 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map15q13.3NCBI
T2T-CHM13v2.01530,222,837 - 30,222,969 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IEA)

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:93
Count of miRNA genes:82
Interacting mature miRNAs:83
Transcripts:ENST00000384260
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
91 119 163 166 487 166 267 14 125 9 170 400 417 27 438 50 221 246 6

Sequence


Ensembl Acc Id: ENST00000384260
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1532,426,288 - 32,426,420 (-)Ensembl
RefSeq Acc Id: XR_007064808
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381532,426,288 - 32,426,420 (-)NCBI
RefSeq Acc Id: XR_007086014
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01530,222,837 - 30,222,969 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC U8 COSMIC
Ensembl Genes ENSG00000206987 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000384260 ENTREZGENE
GTEx ENSG00000206987 GTEx
Human Proteome Map U8 Human Proteome Map
NCBI Gene LOC124900356 ENTREZGENE
RNAcentral URS00006988DC RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 U8  U8 small nucleolar RNA  AC135983.1    Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC135983.1    U8  U8 small nucleolar RNA  Symbol and/or name change 19259462 PROVISIONAL