Gm1604b (predicted gene 1604b) - Rat Genome Database

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Gene: Gm1604b (predicted gene 1604b) Mus musculus
Analyze
Symbol: Gm1604b (Ensembl: Rps6ka2)
Name: predicted gene 1604b (Ensembl:ribosomal protein S6 kinase, polypeptide 2)
RGD ID: 1622813
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000073470; Gm1604; hypothetical protein LOC381059; uncharacterized protein LOC381059
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39177,292,942 - 7,354,996 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl177,292,942 - 7,570,726 (+)EnsemblGRCm39 Ensembl
GRCm38177,025,543 - 7,087,597 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl177,025,568 - 7,087,597 (+)EnsemblGRCm38mm10GRCm38
MGSCv37177,229,892 - 7,291,946 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36176,875,226 - 6,937,218 (+)NCBIMGSCv36mm8
Cytogenetic Map17A1NCBI
cM Map174.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16602821   PMID:21267068  


Genomics

Variants

.
Variants in Gm1604b
1097 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:250
Count of miRNA genes:121
Interacting mature miRNAs:125
Transcripts:ENSMUST00000089120, ENSMUST00000097422
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
1302196Myaa1_mmodifier of Yaa 1 (mouse)Not determined17120975022Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
1357452Vtbt18_mvertebral trabecular bone trait 18 (mouse)Not determined17120975022Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000024575   ⟹   ENSMUSP00000024575
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,437,514 - 7,570,714 (+)Ensembl
Ensembl Acc Id: ENSMUST00000097422   ⟹   ENSMUSP00000095033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,292,967 - 7,354,996 (+)Ensembl
GRCm38.p6 Ensembl177,025,568 - 7,087,597 (+)Ensembl
Ensembl Acc Id: ENSMUST00000231530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,528,035 - 7,553,435 (+)Ensembl
Ensembl Acc Id: ENSMUST00000232136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,523,260 - 7,530,038 (+)Ensembl
Ensembl Acc Id: ENSMUST00000232527   ⟹   ENSMUSP00000156179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,405,837 - 7,526,793 (+)Ensembl
Ensembl Acc Id: ENSMUST00000232617
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,437,526 - 7,457,449 (+)Ensembl
Ensembl Acc Id: ENSMUST00000249877   ⟹   ENSMUSP00000159974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,405,693 - 7,570,726 (+)Ensembl
Ensembl Acc Id: ENSMUST00000249933   ⟹   ENSMUSP00000160030
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl177,292,942 - 7,570,714 (+)Ensembl
RefSeq Acc Id: NM_001033442   ⟹   NP_001028614
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39177,292,942 - 7,354,996 (+)NCBI
GRCm38177,025,543 - 7,087,597 (+)ENTREZGENE
MGSCv37177,229,892 - 7,291,946 (+)RGD
cM Map17 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001028614 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI47041 (Get FASTA)   NCBI Sequence Viewer  
  AAI47042 (Get FASTA)   NCBI Sequence Viewer  
  BAE34386 (Get FASTA)   NCBI Sequence Viewer  
  BAE37070 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001028614   ⟸   NM_001033442
- UniProtKB: Q3TRG0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000095033   ⟸   ENSMUST00000097422
Ensembl Acc Id: ENSMUSP00000156179   ⟸   ENSMUST00000232527
Ensembl Acc Id: ENSMUSP00000024575   ⟸   ENSMUST00000024575
Ensembl Acc Id: ENSMUSP00000159974   ⟸   ENSMUST00000249877
Ensembl Acc Id: ENSMUSP00000160030   ⟸   ENSMUST00000249933

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3TRG0-F1-model_v2 AlphaFold Q3TRG0 1-118 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000023809 Ensembl, ENTREZGENE
  ENSMUSG00000094083 Ensembl
Ensembl Transcript ENSMUST00000097422 ENTREZGENE
KEGG Report mmu:381059 UniProtKB/TrEMBL
MGD MGI:2686450 ENTREZGENE
NCBI Gene 381059 ENTREZGENE
PhenoGen Gm1604b PhenoGen
UniProt Q3TRG0 ENTREZGENE, UniProtKB/TrEMBL
  Q3TZ24_MOUSE UniProtKB/TrEMBL