Dcpp3 (demilune cell and parotid protein 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Dcpp3 (demilune cell and parotid protein 3) Mus musculus
Analyze
No known orthologs.
Symbol: Dcpp3
Name: demilune cell and parotid protein 3
RGD ID: 1622602
MGI Page MGI
Description: Predicted to be active in extracellular space. Is expressed in embryo.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Dcpp-3; EG620253; SPT-3; sublingual parotid tongue-3 salivary protein
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,136,432 - 24,138,415 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,136,432 - 24,138,415 (+)EnsemblGRCm39 Ensembl
GRCm381723,917,419 - 23,919,441 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1723,917,458 - 23,919,441 (+)EnsemblGRCm38mm10GRCm38
MGSCv371724,054,425 - 24,056,408 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361723,644,850 - 23,647,063 (+)NCBIMGSCv36mm8
Celera1724,395,878 - 24,397,869 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
choline  (EXP)
folic acid  (EXP)
L-methionine  (EXP)
phenobarbital  (EXP)
pioglitazone  (EXP)
XL147  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16954406   PMID:21873635   PMID:22008794  


Genomics

Variants

.
Variants in Dcpp3
36 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:65
Interacting mature miRNAs:65
Transcripts:ENSMUST00000115428
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1219832925076769Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
12910769Rtmq1_mrenal tumor modifier QTL 1 (mouse)172290003625721472Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse

Markers in Region
C86550  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17A3.3UniSTS
D17Mit55  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381723,916,569 - 23,916,738UniSTSGRCm38
GRCm381723,897,842 - 23,897,997UniSTSGRCm38
MGSCv371724,034,809 - 24,034,964UniSTSGRCm37
MGSCv371724,053,536 - 24,053,705UniSTSGRCm37
Celera1724,416,741 - 24,416,898UniSTS
Cytogenetic Map17A3.3UniSTS
cM Map1712.6UniSTS
cM Map17 UniSTS
Whitehead Genetic173.3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000115428   ⟹   ENSMUSP00000111088
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,136,432 - 24,138,415 (+)Ensembl
GRCm38.p6 Ensembl1723,917,458 - 23,919,441 (+)Ensembl
Ensembl Acc Id: ENSMUST00000234395   ⟹   ENSMUSP00000156985
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1724,136,452 - 24,138,414 (+)Ensembl
GRCm38.p6 Ensembl1723,917,478 - 23,919,440 (+)Ensembl
RefSeq Acc Id: NM_001077633   ⟹   NP_001071101
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391724,136,432 - 24,138,415 (+)NCBI
GRCm381723,917,458 - 23,919,441 (+)NCBI
MGSCv371724,054,425 - 24,056,408 (+)RGD
Celera1724,395,878 - 24,397,869 (+)NCBI
cM Map17 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001071101 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000111088
  ENSMUSP00000111088.2
  ENSMUSP00000156985.2
RefSeq Acc Id: NP_001071101   ⟸   NM_001077633
- Peptide Label: precursor
- UniProtKB: L7N259 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000111088   ⟸   ENSMUST00000115428
Ensembl Acc Id: ENSMUSP00000156985   ⟸   ENSMUST00000234395
Protein Domains
Jacalin-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-L7N259-F1-model_v2 AlphaFold L7N259 1-170 view protein structure

Promoters
RGD ID:13674976
Promoter ID:EPDNEW_M21637
Type:single initiation site
Name:Dcpp3_1
Description:Mus musculus demilune cell and parotid protein 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381723,917,458 - 23,917,518EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3646420 AgrOrtholog
Ensembl Genes ENSMUSG00000057417 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000115428 ENTREZGENE
  ENSMUST00000115428.2 UniProtKB/TrEMBL
  ENSMUST00000234395.2 UniProtKB/TrEMBL
Gene3D-CATH 2.100.10.30 UniProtKB/TrEMBL
InterPro Jacalin-like_lectin_dom_sf UniProtKB/TrEMBL
  Mannose-bd_lectin UniProtKB/TrEMBL
  PolyBind_ProtTraffic UniProtKB/TrEMBL
KEGG Report mmu:620253 UniProtKB/TrEMBL
MGD MGI:3646420 ENTREZGENE
NCBI Gene 620253 ENTREZGENE
PANTHER OS11G0524900 PROTEIN UniProtKB/TrEMBL
  ZYMOGEN GRANULE PROTEIN 16 HOMOLOG B UniProtKB/TrEMBL
Pfam Jacalin UniProtKB/TrEMBL
PhenoGen Dcpp3 PhenoGen
PROSITE JACALIN_LECTIN UniProtKB/TrEMBL
SMART Jacalin UniProtKB/TrEMBL
Superfamily-SCOP Mannose-bd_lectin UniProtKB/TrEMBL
UniProt L7N259 ENTREZGENE, UniProtKB/TrEMBL