Cldn34c5 (claudin 34C5) - Rat Genome Database

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Gene: Cldn34c5 (claudin 34C5) Mus musculus
Analyze
No known orthologs.
Symbol: Cldn34c5
Name: claudin 34C5
RGD ID: 1621116
MGI Page MGI
Description: Predicted to be involved in bicellular tight junction assembly and cell adhesion. Located in mitochondrion. Orthologous to human CLDN34 (claudin 34).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EG546368; Gm5945; uncharacterized protein Cldn34c5; uncharacterized protein Gm5945
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X122,925,702 - 122,954,053 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX122,925,695 - 122,953,536 (+)EnsemblGRCm39 Ensembl
GRCm38X124,016,018 - 124,044,356 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX124,015,997 - 124,041,521 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X121,154,195 - 121,155,130 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X120,132,942 - 120,158,795 (+)NCBIMGSCv36mm8
Cytogenetic MapXE3NCBI
cM MapX49.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:18614015   PMID:21873635  


Genomics

Variants

.
Variants in Cldn34c5
821 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
25314309Syncl5_msynaptonemal complex length 5 (mouse)X121909697152582996Mouse
1301209Cia19_mcollagen induced arthritis 19 (mouse)Not determinedX120993165160213038Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000238503   ⟹   ENSMUSP00000158686
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX122,925,695 - 122,953,536 (+)Ensembl
GRCm38.p6 EnsemblX124,015,997 - 124,041,521 (+)Ensembl
RefSeq Acc Id: XM_006528440   ⟹   XP_006528503
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X122,925,702 - 122,951,218 (+)NCBI
GRCm38X124,016,018 - 124,041,521 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006528441   ⟹   XP_006528504
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X122,925,702 - 122,951,218 (+)NCBI
GRCm38X124,016,018 - 124,041,521 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006528442   ⟹   XP_006528505
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X122,948,816 - 122,951,218 (+)NCBI
GRCm38X124,039,118 - 124,041,521 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011247722   ⟹   XP_011246024
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X122,925,702 - 122,954,053 (+)NCBI
GRCm38X124,016,018 - 124,044,356 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_006528503 (Get FASTA)   NCBI Sequence Viewer  
  XP_006528504 (Get FASTA)   NCBI Sequence Viewer  
  XP_006528505 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246024 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000158686
  ENSMUSP00000158686.1
RefSeq Acc Id: XP_006528503   ⟸   XM_006528440
- Peptide Label: isoform X1
- UniProtKB: Q9CXT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528504   ⟸   XM_006528441
- Peptide Label: isoform X2
- UniProtKB: A0A571BDD5 (UniProtKB/TrEMBL),   Q9CXT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006528505   ⟸   XM_006528442
- Peptide Label: isoform X2
- UniProtKB: A0A571BDD5 (UniProtKB/TrEMBL),   Q9CXT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011246024   ⟸   XM_011247722
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSMUSP00000158686   ⟸   ENSMUST00000238503

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A571BDD5-F1-model_v2 AlphaFold A0A571BDD5 1-234 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3646000 AgrOrtholog
Ensembl Genes ENSMUSG00000118483 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000238503 ENTREZGENE
  ENSMUST00000238503.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
MGD MGI:3646000 ENTREZGENE
NCBI Gene 546368 ENTREZGENE
PANTHER CLAUDIN 34C1-RELATED UniProtKB/TrEMBL
  PTHR12002 UniProtKB/TrEMBL
PhenoGen Cldn34c5 PhenoGen
UniProt A0A571BDD5 ENTREZGENE, UniProtKB/TrEMBL
  Q9CXT3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-05 Cldn34c5  claudin 34C5  Gm5945  predicted gene 5945  Symbol and/or name updated 27372883 PROVISIONAL