Gm6988 (predicted gene 6988) - Rat Genome Database

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Gene: Gm6988 (predicted gene 6988) Mus musculus
Analyze
Symbol: Gm6988
Name: predicted gene 6988
RGD ID: 1621053
MGI Page MGI
Description:
Type: protein-coding (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S25-like; EG629595; predicted gene, EG629595
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912110,282,361 - 110,282,861 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12110,282,424 - 110,282,798 (+)EnsemblGRCm39 Ensembl
GRCm3812110,315,927 - 110,316,427 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12110,315,990 - 110,316,364 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712111,554,193 - 111,554,577 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612110,763,728 - 110,764,258 (+)NCBIMGSCv36mm8
MGSCv3612104,583,136 - 104,583,666 (+)NCBIMGSCv36mm8
Celera12111,509,569 - 111,509,953 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Gm6988
20 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
11039526Ccc1_mcolitis susceptibility in the Collaborative Cross 1 (mouse)1293528334111028223Mouse
4141297Plyid_mPolymeric IgA dominance (mouse)Not determined109183385115885122Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102024665120092757Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
1558957Igan4_mIgA nephropathy 4 (mouse)Not determined12109750025119024949Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_036157777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL591207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000222676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12110,282,424 - 110,282,798 (+)Ensembl
GRCm38.p6 Ensembl12110,315,990 - 110,316,364 (+)Ensembl
RefSeq Acc Id: XM_036157777   ⟹   XP_036013670
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912110,282,361 - 110,282,861 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_036013670 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_036013670   ⟸   XM_036157777

Promoters
RGD ID:6823008
Promoter ID:MM_KWN:12783
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:XM_986755_GM6988
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612111,554,236 - 111,554,736 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000113198 Ensembl
MGD MGI:3647486 ENTREZGENE
NCBI Gene 629595 ENTREZGENE
PhenoGen Gm6988 PhenoGen