A630010A05Rik (RIKEN cDNA A630010A05 gene) - Rat Genome Database

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Gene: A630010A05Rik (RIKEN cDNA A630010A05 gene) Mus musculus
Analyze
Symbol: A630010A05Rik
Name: RIKEN cDNA A630010A05 gene
RGD ID: 1619582
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: PREDICTED
Previously known as: RP24-255L12.1
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391614,380,181 - 14,439,148 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1614,380,181 - 14,451,972 (+)EnsemblGRCm39 Ensembl
GRCm381614,562,317 - 14,621,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1614,562,317 - 14,634,108 (+)EnsemblGRCm38mm10GRCm38
MGSCv371614,562,410 - 14,621,377 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361614,493,802 - 14,547,491 (+)NCBIMGSCv36mm8
Celera1615,166,281 - 15,218,853 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map169.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21677750  


Genomics

Variants

.
Variants in A630010A05Rik
1807 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:354
Count of miRNA genes:123
Interacting mature miRNAs:127
Transcripts:ENSMUST00000100165, ENSMUST00000129643, ENSMUST00000147024
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120780888Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse
1302106Rapop1_mradiation-induced apoptosis 1 (mouse)Not determined16378077915731053Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16713690629225471Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse

Markers in Region
Results_ER_9_1_95_4_18.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381614,608,949 - 14,609,049UniSTSGRCm38
MGSCv371614,609,042 - 14,609,142UniSTSGRCm37
Celera1615,206,525 - 15,206,625UniSTS
Cytogenetic Map16A1UniSTS
Whitehead_YAC13 UniSTS
RH137294  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381133,619,914 - 133,620,116UniSTSGRCm38
GRCm381614,595,645 - 14,595,838UniSTSGRCm38
MGSCv371614,595,738 - 14,595,931UniSTSGRCm37
MGSCv371135,516,491 - 135,516,693UniSTSGRCm37
Celera1615,193,249 - 15,193,442UniSTS
Celera1136,233,883 - 136,234,507UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map16A1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000100165   ⟹   ENSMUSP00000097741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1614,407,073 - 14,439,150 (+)Ensembl
GRCm38.p6 Ensembl1614,589,209 - 14,621,286 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129643   ⟹   ENSMUSP00000116904
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1614,380,181 - 14,451,972 (+)Ensembl
GRCm38.p6 Ensembl1614,562,317 - 14,634,108 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147024   ⟹   ENSMUSP00000122979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1614,398,085 - 14,439,164 (+)Ensembl
GRCm38.p6 Ensembl1614,580,221 - 14,621,300 (+)Ensembl
RefSeq Acc Id: NR_033556
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391614,380,181 - 14,439,148 (+)NCBI
GRCm381614,562,317 - 14,621,284 (+)ENTREZGENE
MGSCv371614,562,410 - 14,621,377 (+)RGD
Celera1615,166,281 - 15,218,853 (+)RGD
cM Map16 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAE24109 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000122979   ⟸   ENSMUST00000147024
RefSeq Acc Id: ENSMUSP00000116904   ⟸   ENSMUST00000129643
RefSeq Acc Id: ENSMUSP00000097741   ⟸   ENSMUST00000100165

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A9C474-F1-model_v2 AlphaFold A9C474 1-638 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000075395 Ensembl
MGD MGI:3584518 ENTREZGENE
NCBI Gene 545280 ENTREZGENE
PhenoGen A630010A05Rik PhenoGen
RNAcentral URS000075C6BC RNACentral
UniProt Q3UT71_MOUSE UniProtKB/TrEMBL