A630010A05Rik (RIKEN cDNA A630010A05 gene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: A630010A05Rik (RIKEN cDNA A630010A05 gene) Mus musculus
Analyze
Symbol: A630010A05Rik
Name: RIKEN cDNA A630010A05 gene
RGD ID: 1619582
MGI Page MGI
Description:
Type: protein-coding (Ensembl: lncRNA)
Previously known as: RP24-255L12.1
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391614,380,181 - 14,439,148 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1614,380,181 - 14,451,972 (+)EnsemblGRCm39 Ensembl
GRCm381614,562,317 - 14,621,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1614,562,317 - 14,634,108 (+)EnsemblGRCm38mm10GRCm38
MGSCv371614,562,410 - 14,621,377 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361614,493,802 - 14,547,491 (+)NCBIMGSCv36mm8
Celera1615,166,281 - 15,218,853 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map169.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in A630010A05Rik
1807 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:354
Count of miRNA genes:123
Interacting mature miRNAs:127
Transcripts:ENSMUST00000100165, ENSMUST00000129643, ENSMUST00000147024
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301970Heal11_mwound healing/regeneration 11 (mouse)Not determined16124263853Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1301841Lrnx9_mlearning-contextual 9 (mouse)Not determined161222536046225471Mouse
4142460Nilac10_mnicotine induced locomotor activity 10 (mouse)Not determined16713690629225471Mouse
38501069Tip4_mtuberculosis immunophenotype 4, IFN-g level (mouse)16431786444520363Mouse
1302106Rapop1_mradiation-induced apoptosis 1 (mouse)Not determined16378077915731053Mouse
26884432Zlq7_mzygomatic length QTL 7, 10 week (mouse)16381786464620363Mouse
1300632Loca2_mlocomotor activity 2 (mouse)Not determined16122500574Mouse
1301086Lprm5_mlymphoproliferation modifier 5 (mouse)Not determined161184882445848923Mouse
27226768Tibl9_mtibia length 9, 5 week (mouse)16331786451420363Mouse
1301443Mopkd2_mmodifier of polycystic kidney disease progression 2 (mouse)Not determined16464631438646414Mouse
10043978Obq35_mobesity QTL 35 (mouse)Not determined16988163143881631Mouse
1301575Tanidd3_mtally ho associated non-insulin dependednt diabetes mellitus 3 (mouse)Not determined16122897739Mouse
1357763Lp1_mlymphocyte proliferation 1 (mouse)Not determined16654297965466552Mouse
1301384Dice1_mdetermination of interleukin 4 commitment 1 (mouse)Not determined16128434358Mouse
1300943Skts9_mskin tumor susceptibility 9 (mouse)Not determined16577525239775440Mouse
10402497Lmr23_mleishmaniasis resistance 23 (mouse)Not determined16129674200Mouse
10412289Ppsl_mplasma P-selectin levels (mouse)Not determined16130814572Mouse
4141468Nhdlq10_mnon-HDL QTL 10 (mouse)Not determined16124263853Mouse
1300656Bgeq15_mbody growth early QTL 15 (mouse)Not determined16577525239775440Mouse
1301559Bbaa19_mB.burgdorferi-associated arthritis 19 (mouse)Not determined16130066977Mouse
11251724Ewc6_methanol withdrawal and consumption 6 (mouse)16822605242226052Mouse
1300987Skull23_mskull morphology 23 (mouse)Not determined16577525239775440Mouse
1301945Skl7_mskeletal size (tail length) 7 (mouse)Not determined16577525239775440Mouse
4141010Bbq1_mbrain and behavior QTL 1 (mouse)Not determined16647700935021216Mouse
27095908Scvln7_msacral vertebrae length 2, 5 week (mouse)16331786439820362Mouse
4141060Pbwg19_mpostnatal body weight growth 19 (mouse)Not determined16120780888Mouse
10043879Adip25_madiposity 25 (mouse)Not determined16122520318Mouse
27226785Feml12_mfemur length 12, 5 week (mouse)16331786464620363Mouse

Markers in Region
Results_ER_9_1_95_4_18.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381614,608,949 - 14,609,049UniSTSGRCm38
MGSCv371614,609,042 - 14,609,142UniSTSGRCm37
Celera1615,206,525 - 15,206,625UniSTS
Cytogenetic Map16A1UniSTS
Whitehead_YAC13 UniSTS
RH137294  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381133,619,914 - 133,620,116UniSTSGRCm38
GRCm381614,595,645 - 14,595,838UniSTSGRCm38
MGSCv371614,595,738 - 14,595,931UniSTSGRCm37
MGSCv371135,516,491 - 135,516,693UniSTSGRCm37
Celera1615,193,249 - 15,193,442UniSTS
Celera1136,233,883 - 136,234,507UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map16A1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000100165   ⟹   ENSMUSP00000097741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1614,407,073 - 14,439,150 (+)Ensembl
GRCm38.p6 Ensembl1614,589,209 - 14,621,286 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129643   ⟹   ENSMUSP00000116904
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1614,380,181 - 14,451,972 (+)Ensembl
GRCm38.p6 Ensembl1614,562,317 - 14,634,108 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147024   ⟹   ENSMUSP00000122979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1614,398,085 - 14,439,164 (+)Ensembl
GRCm38.p6 Ensembl1614,580,221 - 14,621,300 (+)Ensembl
RefSeq Acc Id: NR_033556
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391614,380,181 - 14,439,148 (+)NCBI
GRCm381614,562,317 - 14,621,284 (+)ENTREZGENE
MGSCv371614,562,410 - 14,621,377 (+)RGD
Celera1615,166,281 - 15,218,853 (+)RGD
cM Map16 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAE24109 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSMUSP00000122979   ⟸   ENSMUST00000147024
Ensembl Acc Id: ENSMUSP00000116904   ⟸   ENSMUST00000129643
Ensembl Acc Id: ENSMUSP00000097741   ⟸   ENSMUST00000100165

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A9C474-F1-model_v2 AlphaFold A9C474 1-638 view protein structure


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000075395 Ensembl
MGD MGI:3584518 ENTREZGENE
NCBI Gene A630010A05Rik ENTREZGENE
PhenoGen A630010A05Rik PhenoGen
RNAcentral URS000075C6BC RNACentral
UniProt Q3UT71_MOUSE UniProtKB/TrEMBL