Etd (embryonic testis differentiation) - Rat Genome Database

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Gene: Etd (embryonic testis differentiation) Mus musculus
Analyze
Symbol: Etd
Name: embryonic testis differentiation
RGD ID: 1619169
MGI Page MGI
Description: Is expressed in ovary; primary sex cord; and testis. Orthologous to several human genes including ETDA (embryonic testis differentiation homolog A) and ETDB (embryonic testis differentiation homolog B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700030K02Rik; embryonic testis differentiation-associated; uncharacterized protein LOC69501
RGD Orthologs
Human
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X52,523,795 - 52,532,453 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX52,523,795 - 52,532,453 (+)EnsemblGRCm39 Ensembl
GRCm38X53,434,918 - 53,443,576 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX53,434,918 - 53,443,576 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X50,788,095 - 50,796,753 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X49,679,545 - 49,688,203 (+)NCBIMGSCv36mm8
CeleraX40,863,712 - 40,872,305 (+)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX29.64NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12617826   PMID:15533830   PMID:16141072   PMID:16141073   PMID:22496664   PMID:25725066  


Genomics

Comparative Map Data
Etd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X52,523,795 - 52,532,453 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX52,523,795 - 52,532,453 (+)EnsemblGRCm39 Ensembl
GRCm38X53,434,918 - 53,443,576 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX53,434,918 - 53,443,576 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X50,788,095 - 50,796,753 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X49,679,545 - 49,688,203 (+)NCBIMGSCv36mm8
CeleraX40,863,712 - 40,872,305 (+)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX29.64NCBI
ETDB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X135,118,955 - 135,120,526 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX135,118,955 - 135,120,526 (-)EnsemblGRCh38hg38GRCh38
GRCh37X134,252,881 - 134,254,454 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X134,080,674 - 134,080,853 (-)NCBINCBI36Build 36hg18NCBI36
CeleraX134,770,006 - 134,771,528 (+)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX123,745,348 - 123,746,872 (+)NCBIHuRef
CHM1_1X134,164,663 - 134,166,187 (-)NCBICHM1_1
T2T-CHM13v2.0X133,444,747 - 133,446,318 (-)NCBIT2T-CHM13v2.0
ETDB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1X134,555,396 - 134,557,052 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X124,263,100 - 124,264,712 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X134,735,837 - 134,737,411 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX134,737,105 - 134,737,284 (+)Ensemblpanpan1.1panPan2
ETDB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X110,395,743 - 110,397,244 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606548,008,356 - 48,009,862 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Etd
251 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:137
Count of miRNA genes:127
Interacting mature miRNAs:128
Transcripts:ENSMUST00000074232
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
27226750Femd9_mfemur midshaft diameter 9, 10 week (mouse)X3333746355845360Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
4142286Pubt1_mpubertal timing 1 (mouse)Not determined5241220061880496Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5077237570434751Mouse
4141126Lvic5_mliver iron content 5 (mouse)Not determined5241220063027567Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse

Markers in Region
Etd  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37X50,796,565 - 50,796,729UniSTSGRCm37
CeleraX40,872,117 - 40,872,281UniSTS
Cytogenetic MapXA5UniSTS
cM MapX UniSTS
Etd  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X53,443,388 - 53,443,552UniSTSGRCm38
MGSCv37X50,796,565 - 50,796,729UniSTSGRCm37
CeleraX40,872,117 - 40,872,281UniSTS
Cytogenetic MapXA5UniSTS
cM MapX UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000074232   ⟹   ENSMUSP00000073854
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX52,523,795 - 52,532,453 (+)Ensembl
GRCm38.p6 EnsemblX53,434,918 - 53,443,576 (+)Ensembl
RefSeq Acc Id: NM_175147   ⟹   NP_780356
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X52,523,795 - 52,532,453 (+)NCBI
GRCm38X53,434,918 - 53,443,576 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_780356 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH48661 (Get FASTA)   NCBI Sequence Viewer  
  AAN08618 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000073854
  ENSMUSP00000073854.7
GenBank Protein Q80SW5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_780356   ⟸   NM_175147
- UniProtKB: Q80SW5 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000073854   ⟸   ENSMUST00000074232

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80SW5-F1-model_v2 AlphaFold Q80SW5 1-59 view protein structure

Promoters
RGD ID:13680492
Promoter ID:EPDNEW_M24395
Type:initiation region
Name:Etd_1
Description:Mus musculus embryonic testis differentiation , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X53,434,958 - 53,435,018EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916751 AgrOrtholog
Ensembl Genes ENSMUSG00000060967 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000074232 ENTREZGENE
  ENSMUST00000074232.7 UniProtKB/Swiss-Prot
MGD MGI:1916751 ENTREZGENE
NCBI Gene 69501 ENTREZGENE
PhenoGen Etd PhenoGen
UniProt ETD_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE