Gpr82 (G protein-coupled receptor 82) - Rat Genome Database

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Gene: Gpr82 (G protein-coupled receptor 82) Mus musculus
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Symbol: Gpr82
Name: G protein-coupled receptor 82
RGD ID: 1618006
MGI Page MGI
Description: Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Orthologous to human GPR82 (G protein-coupled receptor 82).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: G protein-coupled receptor GPR82; probable G-protein coupled receptor 82
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X13,512,373 - 13,533,669 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX13,527,602 - 13,533,672 (+)EnsemblGRCm39 Ensembl
GRCm38X13,646,134 - 13,667,433 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX13,661,363 - 13,667,433 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X13,238,489 - 13,244,559 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X12,818,322 - 12,824,392 (+)NCBIMGSCv36mm8
CeleraX11,330,210 - 11,336,272 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX8.59NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12679517   PMID:16141072   PMID:16141073   PMID:21267068   PMID:22216272  


Genomics

Comparative Map Data
Gpr82
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X13,512,373 - 13,533,669 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX13,527,602 - 13,533,672 (+)EnsemblGRCm39 Ensembl
GRCm38X13,646,134 - 13,667,433 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX13,661,363 - 13,667,433 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X13,238,489 - 13,244,559 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X12,818,322 - 12,824,392 (+)NCBIMGSCv36mm8
CeleraX11,330,210 - 11,336,272 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX8.59NCBI
GPR82
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X41,724,181 - 41,730,130 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX41,724,181 - 41,730,130 (+)EnsemblGRCh38hg38GRCh38
GRCh37X41,583,434 - 41,589,383 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X41,468,352 - 41,472,393 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X41,339,661 - 41,343,703NCBI
CeleraX45,725,632 - 45,731,612 (+)NCBICelera
Cytogenetic MapXp11.4NCBI
HuRefX39,314,425 - 39,320,635 (+)NCBIHuRef
CHM1_1X41,615,880 - 41,621,881 (+)NCBICHM1_1
T2T-CHM13v2.0X41,129,121 - 41,135,070 (+)NCBIT2T-CHM13v2.0
Gpr82
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X11,751,846 - 11,757,526 (-)NCBIGRCr8
mRatBN7.2X9,079,016 - 9,084,696 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX9,080,254 - 9,081,240 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX9,263,732 - 9,269,417 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X12,760,871 - 12,766,556 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X9,032,758 - 9,038,439 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X9,992,832 - 10,001,036 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX9,998,415 - 9,999,401 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X10,795,769 - 10,800,978 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X21,092,151 - 21,093,137 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX9,614,149 - 9,622,353 (-)NCBICelera
Cytogenetic MapXq12NCBI
Gpr82
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555651,075,457 - 1,080,418 (-)NCBIChiLan1.0ChiLan1.0
GPR82
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X43,373,902 - 43,374,982 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X43,377,275 - 43,379,940 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X34,172,153 - 34,176,193 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X41,868,163 - 41,869,172 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX41,868,163 - 41,869,172 (+)Ensemblpanpan1.1panPan2
GPR82
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X36,103,032 - 36,109,360 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX36,107,210 - 36,108,220 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX23,451,426 - 23,457,148 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X36,185,583 - 36,191,305 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX36,187,244 - 36,190,418 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X36,231,963 - 36,237,684 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X36,209,845 - 36,215,567 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X36,247,524 - 36,253,246 (+)NCBIUU_Cfam_GSD_1.0
Gpr82
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X28,257,809 - 28,261,638 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365028,098,580 - 8,102,349 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365028,100,698 - 8,102,349 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPR82
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX37,328,678 - 37,334,984 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X37,328,672 - 37,334,144 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X41,555,036 - 41,560,256 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPR82
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X38,918,871 - 38,932,011 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX38,930,844 - 38,931,854 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660764,095,639 - 4,096,834 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpr82
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476213,913,036 - 13,914,803 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gpr82
457 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:291
Count of miRNA genes:227
Interacting mature miRNAs:251
Transcripts:ENSMUST00000053659
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302195Pbwg10_mpostnatal body weight growth 10 (mouse)Not determinedX126202173Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
1301551Spha1_msperm head anomaly 1 (mouse)Not determinedX1026622539921652Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse

Markers in Region
Gpr82  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X13,665,230 - 13,666,065UniSTSGRCm38
MGSCv37X13,242,356 - 13,243,191UniSTSGRCm37
CeleraX11,334,069 - 11,334,904UniSTS
Cytogenetic MapXA1.1UniSTS
cM MapX UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000053659   ⟹   ENSMUSP00000062535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX13,527,602 - 13,533,672 (+)Ensembl
GRCm38.p6 EnsemblX13,661,363 - 13,667,433 (+)Ensembl
RefSeq Acc Id: NM_175669   ⟹   NP_783600
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X13,527,576 - 13,533,669 (+)NCBI
GRCm38X13,661,363 - 13,667,433 (+)NCBI
MGSCv37X13,238,489 - 13,244,559 (+)RGD
CeleraX11,330,210 - 11,336,272 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017318522   ⟹   XP_017174011
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X13,512,373 - 13,533,364 (+)NCBI
GRCm38X13,646,134 - 13,667,125 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030251364   ⟹   XP_030107224
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X13,512,373 - 13,533,364 (+)NCBI
GRCm38X13,646,134 - 13,667,125 (+)NCBI
Sequence:
RefSeq Acc Id: NP_783600   ⟸   NM_175669
- UniProtKB: Q80UB1 (UniProtKB/Swiss-Prot),   Q8BZR0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017174011   ⟸   XM_017318522
- Peptide Label: isoform X1
- UniProtKB: Q80UB1 (UniProtKB/Swiss-Prot),   Q8BZR0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030107224   ⟸   XM_030251364
- Peptide Label: isoform X1
- UniProtKB: Q8BZR0 (UniProtKB/Swiss-Prot),   Q80UB1 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000062535   ⟸   ENSMUST00000053659

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BZR0-F1-model_v2 AlphaFold Q8BZR0 1-328 view protein structure

Promoters
RGD ID:13680132
Promoter ID:EPDNEW_M24215
Type:initiation region
Name:Gpr82_1
Description:Mus musculus G protein-coupled receptor 82 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X13,661,337 - 13,661,397EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2441734 AgrOrtholog
Ensembl Genes ENSMUSG00000047678 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000053659 ENTREZGENE
  ENSMUST00000053659.2 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  GPR82 UniProtKB/Swiss-Prot
KEGG Report mmu:319200 UniProtKB/Swiss-Prot
MGD MGI:2441734 ENTREZGENE
NCBI Gene 319200 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR 82-RELATED UniProtKB/Swiss-Prot
  PTHR47392 UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot
PhenoGen Gpr82 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt GPR82_MOUSE UniProtKB/Swiss-Prot
  Q80UB1 ENTREZGENE
  Q8BZR0 ENTREZGENE
UniProt Secondary Q80UB1 UniProtKB/Swiss-Prot