2410022M11Rik (RIKEN cDNA 2410022M11 gene) - Rat Genome Database

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Gene: 2410022M11Rik (RIKEN cDNA 2410022M11 gene) Mus musculus
Analyze
Symbol: 2410022M11Rik
Name: RIKEN cDNA 2410022M11 gene
RGD ID: 1617525
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC100503842; hypothetical protein LOC69755
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391457,049,446 - 57,051,356 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1457,049,369 - 57,051,356 (+)EnsemblGRCm39 Ensembl
GRCm381456,811,989 - 56,813,899 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1456,811,989 - 56,813,899 (+)EnsemblGRCm38mm10GRCm38
MGSCv371457,430,834 - 57,431,831 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1454,609,622 - 54,610,656 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in 2410022M11Rik
65 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000186474
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1457,049,369 - 57,051,356 (+)Ensembl
GRCm38.p6 Ensembl1456,811,989 - 56,813,899 (+)Ensembl
RefSeq Acc Id: NR_152252
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391457,049,446 - 57,051,356 (+)NCBI
GRCm381456,811,989 - 56,813,899 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAB27037 (Get FASTA)   NCBI Sequence Viewer  
  BAC35645 (Get FASTA)   NCBI Sequence Viewer  
  BAE37366 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:8682534
Promoter ID:EPDNEW_M19297
Type:initiation region
Name:2410022M11Rik_1
Description:Mus musculus RIKEN cDNA 2410022M11 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381456,811,989 - 56,812,049EPDNEW
RGD ID:15094456
Promoter ID:EPDNEWNC_M2363
Type:initiation region
Name:2410022M11Rik_1
Description:RIKEN cDNA 2410022M11 gene [Source:MGISymbol;Acc:MGI:1917005]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381456,811,989 - 56,812,049EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000100017 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000186474 ENTREZGENE
MGD MGI:1917005 ENTREZGENE
NCBI Gene 2410022M11Rik ENTREZGENE
PhenoGen 2410022M11Rik PhenoGen
RNAcentral URS0000BD6F01 RNACentral
UniProt Q3TQL6_MOUSE UniProtKB/TrEMBL
  Q8C6Q2_MOUSE UniProtKB/TrEMBL
  Q9CRH7_MOUSE UniProtKB/TrEMBL