Or12d2 (olfactory receptor family 12 subfamily D member 2) - Rat Genome Database

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Gene: Or12d2 (olfactory receptor family 12 subfamily D member 2) Mus musculus
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Symbol: Or12d2
Name: olfactory receptor family 12 subfamily D member 2
RGD ID: 1617287
MGI Page MGI
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be active in membrane. Orthologous to several human genes including OR12D2 (olfactory receptor family 12 subfamily D member 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GA_x6K02T2PSCP-1775063-1774137; MOR250; MOR250-4; olfactory receptor 102; olfactory receptor MOR250-4; Olfr102
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,624,302 - 37,625,328 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,622,686 - 37,627,945 (-)EnsemblGRCm39 Ensembl
GRCm381737,313,411 - 37,314,437 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,311,795 - 37,317,054 (-)EnsemblGRCm38mm10GRCm38
MGSCv371737,450,356 - 37,451,382 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361736,921,509 - 36,922,435 (-)NCBIMGSCv36mm8
Celera1740,757,004 - 40,758,028 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
megacolon  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11802173   PMID:11875048   PMID:12477932   PMID:14506126   PMID:14611657   PMID:21873635   PMID:32295537  


Genomics

Comparative Map Data
Or12d2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391737,624,302 - 37,625,328 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1737,622,686 - 37,627,945 (-)EnsemblGRCm39 Ensembl
GRCm381737,313,411 - 37,314,437 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1737,311,795 - 37,317,054 (-)EnsemblGRCm38mm10GRCm38
MGSCv371737,450,356 - 37,451,382 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361736,921,509 - 36,922,435 (-)NCBIMGSCv36mm8
Celera1740,757,004 - 40,758,028 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
OR12D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38629,395,631 - 29,398,008 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl629,395,631 - 29,398,008 (+)EnsemblGRCh38hg38GRCh38
GRCh37629,363,408 - 29,365,785 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,472,456 - 29,473,379 (+)NCBINCBI36Build 36hg18NCBI36
Build 34629,472,455 - 29,473,379NCBI
Celera630,970,469 - 30,971,501 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef629,171,566 - 29,172,598 (+)NCBIHuRef
CHM1_1629,366,381 - 29,367,413 (+)NCBICHM1_1
T2T-CHM13v2.0629,270,421 - 29,272,655 (+)NCBIT2T-CHM13v2.0
Or12d14c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8201,301,891 - 1,302,781 (+)NCBIGRCr8
mRatBN7.2201,296,642 - 1,297,532 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl201,296,470 - 1,297,620 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx201,349,844 - 1,350,734 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0201,353,330 - 1,354,220 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0201,294,865 - 1,295,755 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0201,787,346 - 1,788,236 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl201,787,174 - 1,788,324 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0203,831,522 - 3,832,412 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4201,387,403 - 1,388,293 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera202,010,138 - 2,011,028 (+)NCBICelera
Cytogenetic Map20p12NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:56
Count of miRNA genes:48
Interacting mature miRNAs:56
Transcripts:ENSMUST00000169373
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
26884379Skwq5_mskull length QTL 5, 5 week (mouse)173311897454107028Mouse
1300885Mbis4_mMycobacterium bovis-induced systemic lupus erythematosus 4 (mouse)Not determined173517581770165926Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
4141357Mrdq1_mmodifier of retinal degeneration QTL 1 (mouse)Not determined3098790348039703Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
10755514Amzn2_manatomical modifier of Zfp423 2 (mouse)173596629469966424Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
4140955Plgr1_mplague resistance locus 1 (mouse)Not determined3103350065033630Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
12904951Smmq2_msoleus muscle mass QTL 2 (mouse)173678974370789743Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1300692Blmpf1_mbleomycin-induced pulmonary fibrosis 1 (mouse)Not determined173206165237644775Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse

Markers in Region
UniSTS:489448  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381737,313,456 - 37,314,382UniSTSGRCm38
GRCm381737,299,494 - 37,300,420UniSTSGRCm38
MGSCv371737,450,401 - 37,451,327UniSTSGRCm37
MGSCv371737,436,439 - 37,437,365UniSTSGRCm37
Celera1740,743,603 - 40,744,529UniSTS
Celera1740,757,049 - 40,757,975UniSTS
Cytogenetic Map17B1UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000169373   ⟹   ENSMUSP00000126737
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,624,302 - 37,625,328 (-)Ensembl
GRCm38.p6 Ensembl1737,313,411 - 37,314,437 (-)Ensembl
Ensembl Acc Id: ENSMUST00000217590   ⟹   ENSMUSP00000149168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1737,622,686 - 37,627,945 (-)Ensembl
GRCm38.p6 Ensembl1737,311,795 - 37,317,054 (-)Ensembl
RefSeq Acc Id: NM_001011721   ⟹   NP_001011721
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391737,624,302 - 37,625,328 (-)NCBI
GRCm381737,313,411 - 37,314,437 (-)ENTREZGENE
MGSCv371737,450,356 - 37,451,382 (-)RGD
Celera1740,757,004 - 40,758,028 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_001011721   ⟸   NM_001011721
- UniProtKB: B2RT33 (UniProtKB/TrEMBL),   Q7TRK8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000149168   ⟸   ENSMUST00000217590
Ensembl Acc Id: ENSMUSP00000126737   ⟸   ENSMUST00000169373
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RT33-F1-model_v2 AlphaFold B2RT33 1-308 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2177485 AgrOrtholog
Ensembl Genes ENSMUSG00000091531 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000169373 ENTREZGENE
  ENSMUST00000169373.2 UniProtKB/TrEMBL
  ENSMUST00000217590.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_GPCR UniProtKB/TrEMBL
KEGG Report mmu:258218 UniProtKB/TrEMBL
MGD MGI:2177485 ENTREZGENE
NCBI Gene 258218 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or12d2 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt B2RT33 ENTREZGENE, UniProtKB/TrEMBL
  Q7TRK8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-23 Or12d2  olfactory receptor family 12 subfamily D member 2  Olfr102  olfactory receptor 102  Symbol and/or name updated 27372883 PROVISIONAL