Gm5853 (predicted gene 5853) - Rat Genome Database

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Gene: Gm5853 (predicted gene 5853) Mus musculus
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Symbol: Gm5853
Name: predicted gene 5853
RGD ID: 1617127
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: MODEL
Previously known as: EG545555
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39398,487,080 - 98,487,886 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl398,487,083 - 98,487,714 (-)EnsemblGRCm39 Ensembl
GRCm38398,579,764 - 98,580,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl398,579,767 - 98,580,398 (-)EnsemblGRCm38mm10GRCm38
MGSCv37398,383,687 - 98,384,321 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36398,708,767 - 98,709,564 (-)NCBIMGSCv36mm8
Celera399,917,194 - 99,917,828 (-)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map342.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in Gm5853
60 total Variants

1 to 10 of 43 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse

1 to 10 of 43 rows





RefSeq Transcripts XR_140574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_142045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC175831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000197183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl398,487,083 - 98,487,714 (-)Ensembl
GRCm38.p6 Ensembl398,579,767 - 98,580,398 (-)Ensembl
RefSeq Acc Id: XR_140574
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38398,579,764 - 98,580,398 (-)ENTREZGENE
cM Map3 ENTREZGENE
RefSeq Acc Id: XR_142045
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
Celera399,917,194 - 99,917,828 (-)RGD


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000105641 Ensembl
MGD MGI:3648707 ENTREZGENE
NCBI Gene 545555 ENTREZGENE
PhenoGen Gm5853 PhenoGen