9630028B13Rik (RIKEN cDNA 9630028B13 gene) - Rat Genome Database

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Gene: 9630028B13Rik (RIKEN cDNA 9630028B13 gene) Mus musculus
Analyze
Symbol: 9630028B13Rik
Name: RIKEN cDNA 9630028B13 gene
RGD ID: 1615571
MGI Page MGI
Description: Is expressed in cerebral cortex subventricular zone; pons mantle layer; and rest of cerebellum mantle layer.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391185,161,554 - 185,174,016 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1185,161,552 - 185,174,016 (-)EnsemblGRCm39 Ensembl
GRCm381185,429,357 - 185,441,819 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1185,429,355 - 185,441,819 (-)EnsemblGRCm38mm10GRCm38
MGSCv371187,253,234 - 187,265,698 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361187,130,145 - 187,142,607 (-)NCBIMGSCv36mm8
Celera1192,382,950 - 192,395,408 (-)NCBICelera
Cytogenetic Map1H5NCBI
cM Map189.52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068   PMID:24316575   PMID:30186101   PMID:33798452  
PMID:34321999  



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Variants in 9630028B13Rik
763 total Variants

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:95
Interacting mature miRNAs:97
Transcripts:ENSMUST00000143787
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 79 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
1301652Cpfd2_mcerebellum pattern fissures (mouse)Not determined1172303451195154279Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
4142389Scfr1_mstem cell frequency regulator 1 (mouse)Not determined171632048189303617Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse

1 to 10 of 79 rows






Ensembl Acc Id: ENSMUST00000143787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1185,161,552 - 185,174,016 (-)Ensembl
GRCm38.p6 Ensembl1185,429,355 - 185,441,819 (-)Ensembl
Ensembl Acc Id: ENSMUST00000265250
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1185,163,830 - 185,173,980 (-)Ensembl
RefSeq Acc Id: NR_038006
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391185,161,554 - 185,174,016 (-)NCBI
GRCm381185,429,357 - 185,441,819 (-)ENTREZGENE
Celera1192,382,952 - 192,395,408 (-)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
GenBank Protein AAI47658 (Get FASTA)   NCBI Sequence Viewer  
  BAC29278 (Get FASTA)   NCBI Sequence Viewer  
  BAC33439 (Get FASTA)   NCBI Sequence Viewer  
  EDL13066 (Get FASTA)   NCBI Sequence Viewer  

RGD ID:6876030
Promoter ID:EPDNEW_M1466
Type:initiation region
Name:9630028B13Rik_1
Description:Mus musculus RIKEN cDNA 9630028B13 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381185,441,729 - 185,441,789EPDNEW


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000051295 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000143787 ENTREZGENE
MGD MGI:2442281 ENTREZGENE
NCBI Gene 319562 ENTREZGENE
PhenoGen 9630028B13Rik PhenoGen
RNAcentral URS000075E496 RNACentral
  URS0001972E2C RNACentral
UniProt Q8BH25_MOUSE UniProtKB/TrEMBL