4930540M03Rik (RIKEN cDNA 4930540M03 gene) - Rat Genome Database

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Gene: 4930540M03Rik (RIKEN cDNA 4930540M03 gene) Mus musculus
Analyze
Symbol: 4930540M03Rik
Name: RIKEN cDNA 4930540M03 gene
RGD ID: 1613449
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC78025
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39915,531,153 - 15,552,516 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl915,531,116 - 15,588,858 (+)EnsemblGRCm39 Ensembl
GRCm38915,619,857 - 15,641,220 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl915,619,857 - 15,641,224 (+)EnsemblGRCm38mm10GRCm38
Celera912,899,116 - 12,919,315 (+)NCBICelera
Cytogenetic Map9A2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Variants

.
Variants in 4930540M03Rik
794 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300899Chol6_mcholesterol 6 (mouse)Not determined9129902913Mouse
35673312Ari7_mantibody response to influenza 7, day 45, IgG3 (mouse)9780000122211296Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
1300849Sles4_msystemic lupus erythmatosus suppressor 4 (mouse)Not determined9910756237306370Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
13434920Dcollq1_mdifferential colonization level QTL 1 (mouse)9130341840Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
4142326Tgq19_mtriglyceride QTL 19 (mouse)Not determined121060750Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000216952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,153 - 15,552,520 (+)Ensembl
GRCm38.p6 Ensembl915,619,857 - 15,641,224 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254403
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,231 - 15,588,853 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254404
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,244 - 15,588,853 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254405
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,252 - 15,588,858 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,127 - 15,552,520 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254407
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,141 - 15,552,520 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254408
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,126 - 15,548,921 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254409
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,116 - 15,548,033 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,126 - 15,548,037 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,127 - 15,548,033 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254412
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,128 - 15,548,033 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254413
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,123 - 15,548,027 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,135 - 15,548,033 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254415
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,139 - 15,548,033 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,132 - 15,548,022 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254417
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,142 - 15,548,029 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254418
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,136 - 15,548,022 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,149 - 15,548,033 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254420
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,153 - 15,548,033 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254421
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,149 - 15,548,022 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254422
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,153 - 15,548,022 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254423
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,168 - 15,548,033 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254424
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,128 - 15,547,932 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254425
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,136 - 15,548,033 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254426
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,531,132 - 15,548,022 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254427
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,222 - 15,552,520 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254428
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,239 - 15,552,528 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,241 - 15,552,520 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254430
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,244 - 15,552,521 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254431
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,244 - 15,552,520 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,244 - 15,552,520 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254433
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,231 - 15,548,921 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,231 - 15,548,246 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,238 - 15,548,037 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254436
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,244 - 15,548,033 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,244 - 15,548,033 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254438
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,245 - 15,548,033 (+)Ensembl
Ensembl Acc Id: ENSMUST00000254439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl915,539,273 - 15,539,792 (+)Ensembl
RefSeq Acc Id: NR_040746
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39915,531,153 - 15,552,516 (+)NCBI
GRCm38915,619,857 - 15,641,220 (+)ENTREZGENE
Celera912,899,116 - 12,919,315 (+)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000111299 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000216952 ENTREZGENE
MGD MGI:1925275 ENTREZGENE
NCBI Gene 78025 ENTREZGENE
PhenoGen 4930540M03Rik PhenoGen
RNAcentral URS000075A892 RNACentral