4930469K13Rik (RIKEN cDNA 4930469K13 gene) - Rat Genome Database

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Gene: 4930469K13Rik (RIKEN cDNA 4930469K13 gene) Mus musculus
Analyze
Symbol: 4930469K13Rik
Name: RIKEN cDNA 4930469K13 gene
RGD ID: 1613028
MGI Page MGI
Description: Orthologous to human C5orf58 (chromosome 5 open reading frame 58).
Type: ncrna (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC76874; uncharacterized protein LOC76874
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,923,961 - 34,048,554 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,923,961 - 34,053,738 (-)EnsemblGRCm39 Ensembl
GRCm381133,973,961 - 34,098,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,973,961 - 34,098,554 (-)EnsemblGRCm38mm10GRCm38
Celera1136,476,885 - 36,511,757 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1119.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
4930469K13Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,923,961 - 34,048,554 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,923,961 - 34,053,738 (-)EnsemblGRCm39 Ensembl
GRCm381133,973,961 - 34,098,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,973,961 - 34,098,554 (-)EnsemblGRCm38mm10GRCm38
Celera1136,476,885 - 36,511,757 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1119.33NCBI
C5orf58
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385170,232,985 - 170,252,570 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5170,229,104 - 170,252,575 (+)EnsemblGRCh38hg38GRCh38
GRCh375169,659,989 - 169,679,574 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365169,592,528 - 169,605,813 (+)NCBINCBI36Build 36hg18NCBI36
Celera5165,691,873 - 165,705,161 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5164,758,426 - 164,771,711 (+)NCBIHuRef
CHM1_15169,092,406 - 169,105,691 (+)NCBICHM1_1
T2T-CHM13v2.05170,771,839 - 170,791,430 (+)NCBIT2T-CHM13v2.0
C10h5orf58
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81019,195,306 - 19,203,013 (-)NCBIGRCr8
mRatBN7.21018,690,958 - 18,697,224 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1018,688,847 - 18,697,220 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01019,043,374 - 19,052,918 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1018,322,412 - 18,331,962 (-)NCBICelera
Cytogenetic Map10q12NCBI
LOC102016025
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540823,186,712 - 23,197,682 (+)NCBIChiLan1.0ChiLan1.0
C4H5orf58
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24165,390,079 - 165,403,420 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15163,529,622 - 163,540,760 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05165,592,644 - 165,605,937 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15172,356,037 - 172,363,327 (+)NCBIpanpan1.1PanPan1.1panPan2
C4H5orf58
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1441,656,638 - 41,665,051 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha441,608,640 - 41,617,091 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0442,032,461 - 42,040,931 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1441,849,694 - 41,858,143 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0442,036,532 - 42,045,007 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0442,547,230 - 42,555,686 (-)NCBIUU_Cfam_GSD_1.0
CUNH5orf58
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721395,844,194 - 95,854,984 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366094,570,785 - 4,572,903 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C16H5orf58
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11653,740,219 - 53,747,279 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21658,084,258 - 58,097,742 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH5orf58
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12372,444,166 - 72,448,027 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660346,214,154 - 6,222,652 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH5orf58
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473319,721,377 - 19,728,144 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 4930469K13Rik
4604 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:93
Interacting mature miRNAs:95
Transcripts:ENSMUST00000141450
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000141450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1133,923,961 - 34,048,554 (-)Ensembl
GRCm38.p6 Ensembl1133,973,961 - 34,098,554 (-)Ensembl
Ensembl Acc Id: ENSMUST00000223852   ⟹   ENSMUSP00000153341
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1134,041,281 - 34,048,545 (-)Ensembl
GRCm38.p6 Ensembl1134,091,281 - 34,098,545 (-)Ensembl
Ensembl Acc Id: ENSMUST00000224226   ⟹   ENSMUSP00000153619
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1134,043,042 - 34,048,586 (-)Ensembl
GRCm38.p6 Ensembl1134,094,274 - 34,096,845 (-)Ensembl
Ensembl Acc Id: ENSMUST00000249950   ⟹   ENSMUSP00000160046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1134,041,281 - 34,053,738 (-)Ensembl
RefSeq Acc Id: NR_155520
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391133,923,961 - 34,048,554 (-)NCBI
GRCm381133,973,961 - 34,098,554 (-)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSMUSP00000153341.2
  ENSMUSP00000153619.2
Ensembl Acc Id: ENSMUSP00000153341   ⟸   ENSMUST00000223852
Ensembl Acc Id: ENSMUSP00000153619   ⟸   ENSMUST00000224226
Ensembl Acc Id: ENSMUSP00000160046   ⟸   ENSMUST00000249950

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A286YDB2-F1-model_v2 AlphaFold A0A286YDB2 1-92 view protein structure

Promoters
RGD ID:8674278
Promoter ID:EPDNEW_M15169
Type:single initiation site
Name:AK015529_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15170  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381134,096,918 - 34,096,978EPDNEW
RGD ID:8674280
Promoter ID:EPDNEW_M15170
Type:initiation region
Name:AK015529_2
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15169  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381134,098,575 - 34,098,635EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924124 AgrOrtholog
Ensembl Genes ENSMUSG00000085684 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000141450 ENTREZGENE
  ENSMUST00000223852.2 UniProtKB/TrEMBL
  ENSMUST00000224226.2 UniProtKB/TrEMBL
MGD MGI:1924124 ENTREZGENE
NCBI Gene 76874 ENTREZGENE
PhenoGen 4930469K13Rik PhenoGen
RNAcentral URS0000D77F3E RNACentral
UniProt A0A286YDB2_MOUSE UniProtKB/TrEMBL
  A0A286YDX3_MOUSE UniProtKB/TrEMBL